RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 GPKOWQ92917 476 aaPredicted RBP eCLIP6.87□□□□□ -1.31
VPS50-205ENST00000441602 PPP1R9BQ96SB3 815 aa6.87□□□□□ -1.31
VPS50-205ENST00000441602 GOLPH3LQ9H4A5 285 aa6.87□□□□□ -1.31
VPS50-205ENST00000441602 CCDC39Q9UFE4 941 aa6.87□□□□□ -1.31
VPS50-205ENST00000441602 FRMPD2Q68DX3 1309 aaPredicted RBP6.87□□□□□ -1.31
VPS50-205ENST00000441602 SMTNL1A8MU46 457 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 TBC1D12O60347 775 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 EEF2P13639 858 aaKnown RBP6.86□□□□□ -1.31
VPS50-205ENST00000441602 NDUFA8P51970 172 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 DCAF15Q66K64 600 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 RASSF8Q8NHQ8 419 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 CCDC47Q96A33 483 aaKnown RBP6.86□□□□□ -1.31
VPS50-205ENST00000441602 PIGSQ96S52 555 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 MYH6P13533 1939 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 LONP1P36776 959 aaKnown RBP6.86□□□□□ -1.31
VPS50-205ENST00000441602 ZNF165P49910 485 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 PLCB2Q00722 1185 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 SEPT2Q15019 361 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 ZNF174Q15697 407 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 ANO6Q4KMQ2 910 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 HS1BP3Q53T59 392 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 GMCL1P1Q8NEA9 526 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 FUCA2Q9BTY2 467 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 RAB34Q9BZG1 259 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 ZMYND12Q9H0C1 365 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 FBXO2Q9UK22 296 aaPredicted RBP6.86□□□□□ -1.31
VPS50-205ENST00000441602 PCDHB6Q9Y5E3 794 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 CDK5RAP2Q96SN8 1893 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 MARCH6O60337 910 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 GH2P01242 217 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 ATP2C1P98194 919 aaPredicted RBP6.86□□□□□ -1.31
VPS50-205ENST00000441602 TMEM266Q2M3C6 531 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 CHURC1Q8WUH1 139 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 UPF1Q92900 1129 aaKnown RBP eCLIP6.86□□□□□ -1.31
VPS50-205ENST00000441602 CUL5Q93034 780 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 TNFRSF25Q93038 417 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 GMCL1Q96IK5 515 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 PANK2Q9BZ23 570 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 UBA5Q9GZZ9 404 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 EHMT1Q9H9B1 1298 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 MYOZ2Q9NPC6 264 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 PNMA2Q9UL42 364 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 GJA3Q9Y6H8 435 aa6.86□□□□□ -1.31
VPS50-205ENST00000441602 UBE2Q2LH0YL09 131 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 ZBTB5O15062 677 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 GDF11O95390 407 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 BMP3P12645 472 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 TOB1P50616 345 aaPredicted RBP6.85□□□□□ -1.31
VPS50-205ENST00000441602 ZNF280AP59817 542 aaPredicted RBP6.85□□□□□ -1.31
VPS50-205ENST00000441602 DTHD1Q6ZMT9 781 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 KRBA2Q6ZNG9 492 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 NEK8Q86SG6 692 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 FAM160B2Q86V87 743 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 ZFPM1Q8IX07 1006 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 GTPBP4Q9BZE4 634 aaKnown RBP6.85□□□□□ -1.31
VPS50-205ENST00000441602 KIAA1468Q9P260 1216 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 HPSEQ9Y251 543 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 ZBTB12Q9Y330 459 aaPredicted RBP6.85□□□□□ -1.31
VPS50-205ENST00000441602 MRVI1Q9Y6F6 885 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 ASNSP08243 561 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 MCM7P33993 719 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 NLRP12P59046 1061 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 SNW1Q13573 536 aaKnown RBP6.85□□□□□ -1.31
VPS50-205ENST00000441602 DHX8Q14562 1220 aaKnown RBP6.85□□□□□ -1.31
VPS50-205ENST00000441602 SH3BP5LQ7L8J4 393 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 APOBEC3FQ8IUX4 373 aaKnown RBP6.85□□□□□ -1.31
VPS50-205ENST00000441602 SMARCE1Q969G3 411 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 ECM29Q5VYK3 1845 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 MYH8P13535 1937 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 PSME4Q14997 1843 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 NFKBIEO00221 500 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 GCFC2P16383 781 aaKnown RBP6.85□□□□□ -1.31
VPS50-205ENST00000441602 PRPHP41219 470 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 PTGDRQ13258 359 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 SYDE2Q5VT97 1194 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 SHC4Q6S5L8 630 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 TRIML1Q8N9V2 468 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 IQUBQ8NA54 791 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 CLIC6Q96NY7 704 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 FEZ1Q99689 392 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 AMNQ9BXJ7 453 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 PCDHA6Q9UN73 950 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 CTDP1Q9Y5B0 961 aaPredicted RBP6.85□□□□□ -1.31
VPS50-205ENST00000441602 PCDHA8Q9Y5H6 950 aa6.85□□□□□ -1.31
VPS50-205ENST00000441602 SCN9AQ15858 1988 aa6.84□□□□□ -1.31
VPS50-205ENST00000441602 PSDA5PKW4 1024 aaPredicted RBP6.84□□□□□ -1.31
VPS50-205ENST00000441602 F5H6K3 240 aa6.84□□□□□ -1.31
VPS50-205ENST00000441602 CYTH3O43739 400 aa6.84□□□□□ -1.31
VPS50-205ENST00000441602 FOSP01100 380 aaPredicted RBP6.84□□□□□ -1.31
VPS50-205ENST00000441602 GMPSP49915 693 aaPredicted RBP6.84□□□□□ -1.31
VPS50-205ENST00000441602 KLRC3Q07444 240 aa6.84□□□□□ -1.31
VPS50-205ENST00000441602 FBXO11Q86XK2 927 aa6.84□□□□□ -1.31
VPS50-205ENST00000441602 ADGRF4Q8IZF3 695 aa6.84□□□□□ -1.31
VPS50-205ENST00000441602 AK8Q96MA6 479 aa6.84□□□□□ -1.31
VPS50-205ENST00000441602 JMJD4Q9H9V9 463 aa6.84□□□□□ -1.31
VPS50-205ENST00000441602 CBX8Q9HC52 389 aa6.84□□□□□ -1.31
VPS50-205ENST00000441602 RIC8AQ9NPQ8 531 aa6.84□□□□□ -1.31
VPS50-205ENST00000441602 ZBTB21Q9ULJ3 1066 aa6.84□□□□□ -1.31
VPS50-205ENST00000441602 PCDHAC2Q9Y5I4 1007 aa6.84□□□□□ -1.31
VPS50-205ENST00000441602 FAM196BA6NMK8 535 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms