RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 SGMS1Q86VZ5 419 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 ZNF579Q8NAF0 562 aaKnown RBP10.11□□□□□ -0.79
COPB1-202ENST00000439561 RRP36Q96EU6 259 aaKnown RBP10.11□□□□□ -0.79
COPB1-202ENST00000439561 JPH2Q9BR39 696 aaPredicted RBP10.11□□□□□ -0.79
COPB1-202ENST00000439561 NHEJ1Q9H9Q4 299 aaPredicted RBP10.11□□□□□ -0.79
COPB1-202ENST00000439561 EPB41L4AQ9HCS5 686 aaPredicted RBP10.11□□□□□ -0.79
COPB1-202ENST00000439561 PPANQ9NQ55 473 aaKnown RBP10.11□□□□□ -0.79
COPB1-202ENST00000439561 BAZ2BQ9UIF8 2168 aaKnown RBP10.11□□□□□ -0.79
COPB1-202ENST00000439561 TSPY2A6NKD2 308 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 GTPBP6O43824 516 aaPredicted RBP10.11□□□□□ -0.79
COPB1-202ENST00000439561 PDE8BO95263 885 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 STARD3NLO95772 234 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 ARHGAP25P42331 645 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 KLK7P49862 253 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 PDE4DQ08499 809 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 MCTP2Q6DN12 878 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 DTHD1Q6ZMT9 781 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 MB21D1Q8N884 522 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 TTLL11Q8NHH1 800 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.11□□□□□ -0.79
COPB1-202ENST00000439561 CDK5RAP3Q96JB5 506 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 TUBGCP2Q9BSJ2 902 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 LRRC1Q9BTT6 524 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 ZHX3Q9H4I2 956 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 MLXIPQ9HAP2 919 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 RWDD2AQ9UIY3 292 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 JAG2Q9Y219 1238 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 NUTM2BA6NNL0 878 aaPredicted RBP10.11□□□□□ -0.79
COPB1-202ENST00000439561 PP2D1A8MPX8 630 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 NUTM2EB1AL46 878 aaPredicted RBP10.11□□□□□ -0.79
COPB1-202ENST00000439561 MYBL2P10244 700 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 EPS15P42566 896 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 GPKOWQ92917 476 aaPredicted RBP eCLIP10.11□□□□□ -0.797e-7■■■□□ 17.5
COPB1-202ENST00000439561 CCDC43Q96MW1 224 aaKnown RBP10.11□□□□□ -0.79
COPB1-202ENST00000439561 SCLT1Q96NL6 688 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 LACRTQ9GZZ8 138 aa10.11□□□□□ -0.79
COPB1-202ENST00000439561 SOS2Q07890 1332 aaPredicted RBP10.1□□□□□ -0.79
COPB1-202ENST00000439561 H7C1D1 291 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 EXOC5O00471 708 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 NCK2O43639 380 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 SYF2O95926 243 aaKnown RBP10.1□□□□□ -0.79
COPB1-202ENST00000439561 GUCY2CP25092 1073 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 PUM3Q15397 648 aaKnown RBP10.1□□□□□ -0.79
COPB1-202ENST00000439561 POTEDQ86YR6 584 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 KLHL7Q8IXQ5 586 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 FAM184BQ9ULE4 1060 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 RTL9Q8NET4 1388 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 WDR19Q8NEZ3 1342 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 MAGEB6P1A0A0J9YX57 407 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 MAGEA1P43355 309 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 RASGRF1Q13972 1273 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 CDKAL1Q5VV42 579 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 NFRKBQ6P4R8 1299 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 MICALCLQ6ZW33 695 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 RRAGAQ7L523 313 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 HEATR3Q7Z4Q2 680 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 FBXL16Q8N461 479 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 RPGRIP1Q96KN7 1286 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 CCDC114Q96M63 670 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 NLRC4Q9NPP4 1024 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 NWD1Q149M9 1564 aa10.1□□□□□ -0.79
COPB1-202ENST00000439561 E7EVH7 732 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 IGHMBP2P38935 993 aaKnown RBP10.09□□□□□ -0.79
COPB1-202ENST00000439561 CTSWP56202 376 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 GUCY2DQ02846 1103 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 ZNF658Q5TYW1 1059 aaPredicted RBP10.09□□□□□ -0.79
COPB1-202ENST00000439561 CCNI2Q6ZMN8 369 aaPredicted RBP10.09□□□□□ -0.79
COPB1-202ENST00000439561 ZBTB38Q8NAP3 1195 aaPredicted RBP10.09□□□□□ -0.79
COPB1-202ENST00000439561 HDAC7Q8WUI4 952 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 VAT1LQ9HCJ6 419 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 TCP11L1Q9NUJ3 509 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 FMN2Q9NZ56 1722 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 PIK3C2AO00443 1686 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 HEG1Q9ULI3 1381 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 CDHR2Q9BYE9 1310 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 STK36Q9NRP7 1315 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 GSG1L2A8MUP6 293 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 KRT14P02533 472 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 DNM2P50570 870 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 IFT88Q13099 833 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 WDR93Q6P2C0 686 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 B4GALNT4Q76KP1 1039 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 TRAPPC11Q7Z392 1133 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 LPIN2Q92539 896 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 TAF4BQ92750 862 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 RNF26Q9BY78 433 aaPredicted RBP10.09□□□□□ -0.79
COPB1-202ENST00000439561 ATG3Q9NT62 314 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 DMGDHQ9UI17 866 aaKnown RBP10.09□□□□□ -0.79
COPB1-202ENST00000439561 XDHP47989 1333 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 FAM237AA0A1B0GTK4 181 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 SMIM22K7EJ46 135 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 WNT7AO00755 349 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 PCCAP05165 728 aaPredicted RBP10.09□□□□□ -0.79
COPB1-202ENST00000439561 TRHP20396 242 aaPredicted RBP10.09□□□□□ -0.79
COPB1-202ENST00000439561 NNTQ13423 1086 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 HLFQ16534 295 aa10.09□□□□□ -0.79
COPB1-202ENST00000439561 TMCO5BA8MYB1 307 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 GOLGA8KD6RF30 607 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 MYO1FO00160 1098 aa10.08□□□□□ -0.8
COPB1-202ENST00000439561 SEMA3EO15041 775 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms