RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 CCDC194A0A1B0GVG4 234 aa29.29■■■□□ 2.28
CPNE1-216ENST00000437340 ACTN4O43707 911 aaKnown RBP29.29■■■□□ 2.28
CPNE1-216ENST00000437340 TPM4P67936 248 aa29.29■■■□□ 2.28
CPNE1-216ENST00000437340 FOXP4Q8IVH2 680 aaPredicted RBP29.29■■■□□ 2.28
CPNE1-216ENST00000437340 SPC24Q8NBT2 197 aa29.29■■■□□ 2.28
CPNE1-216ENST00000437340 FHDC1Q9C0D6 1143 aaPredicted RBP29.29■■■□□ 2.28
CPNE1-216ENST00000437340 ADAMTS3O15072 1205 aa29.29■■■□□ 2.28
CPNE1-216ENST00000437340 PYM1Q9BRP8 204 aaKnown RBP29.29■■■□□ 2.28
CPNE1-216ENST00000437340 GNA11P29992 359 aa29.28■■■□□ 2.28
CPNE1-216ENST00000437340 RBM5P52756 815 aaKnown RBP eCLIP29.28■■■□□ 2.282e-6■■■□□ 15.7
CPNE1-216ENST00000437340 USP49Q70CQ1 688 aa29.28■■■□□ 2.28
CPNE1-216ENST00000437340 RASGRP2Q7LDG7 609 aa29.28■■■□□ 2.28
CPNE1-216ENST00000437340 SYMPKQ92797 1274 aaKnown RBP29.28■■■□□ 2.28
CPNE1-216ENST00000437340 TTC12Q9H892 705 aaPredicted RBP29.28■■■□□ 2.28
CPNE1-216ENST00000437340 PI4KBQ9UBF8 816 aa29.28■■■□□ 2.28
CPNE1-216ENST00000437340 NAPAP54920 295 aa29.27■■■□□ 2.28
CPNE1-216ENST00000437340 DRC7Q8IY82 874 aa29.27■■■□□ 2.28
CPNE1-216ENST00000437340 TRIML1Q8N9V2 468 aa29.27■■■□□ 2.28
CPNE1-216ENST00000437340 C6orf50Q9HD87 102 aa29.27■■■□□ 2.28
CPNE1-216ENST00000437340 CLIP2Q9UDT6 1046 aa29.27■■■□□ 2.28
CPNE1-216ENST00000437340 FAM198AQ9UFP1 575 aa29.27■■■□□ 2.28
CPNE1-216ENST00000437340 GREB1LQ9C091 1923 aaPredicted RBP29.27■■■□□ 2.28
CPNE1-216ENST00000437340 ESYT2A0FGR8 921 aa29.26■■■□□ 2.28
CPNE1-216ENST00000437340 MCM7P33993 719 aa29.26■■■□□ 2.28
CPNE1-216ENST00000437340 SARSP49591 514 aaKnown RBP29.26■■■□□ 2.28
CPNE1-216ENST00000437340 SLFN14P0C7P3 912 aa29.26■■■□□ 2.27
CPNE1-216ENST00000437340 ZFPM1Q8IX07 1006 aa29.26■■■□□ 2.27
CPNE1-216ENST00000437340 C4orf32Q8N8J7 132 aa29.26■■■□□ 2.27
CPNE1-216ENST00000437340 EPSTI1Q96J88 318 aa29.26■■■□□ 2.27
CPNE1-216ENST00000437340 ZNF830Q96NB3 372 aaPredicted RBP29.26■■■□□ 2.27
CPNE1-216ENST00000437340 VWA3AA6NCI4 1184 aa29.25■■■□□ 2.27
CPNE1-216ENST00000437340 NCAPHQ15003 741 aa29.25■■■□□ 2.27
CPNE1-216ENST00000437340 KRT25Q7Z3Z0 450 aa29.25■■■□□ 2.27
CPNE1-216ENST00000437340 LRRC47Q8N1G4 583 aaKnown RBP29.25■■■□□ 2.27
CPNE1-216ENST00000437340 PDILTQ8N807 584 aa29.25■■■□□ 2.27
CPNE1-216ENST00000437340 SPATA20Q8TB22 786 aa29.25■■■□□ 2.27
CPNE1-216ENST00000437340 SMARCE1Q969G3 411 aa29.25■■■□□ 2.27
CPNE1-216ENST00000437340 CPVLQ9H3G5 476 aa29.25■■■□□ 2.27
CPNE1-216ENST00000437340 LONP1P36776 959 aaKnown RBP29.24■■■□□ 2.27
CPNE1-216ENST00000437340 RASGRP4Q8TDF6 673 aa29.24■■■□□ 2.27
CPNE1-216ENST00000437340 PIGSQ96S52 555 aa29.24■■■□□ 2.27
CPNE1-216ENST00000437340 PCDHAC2Q9Y5I4 1007 aa29.24■■■□□ 2.27
CPNE1-216ENST00000437340 LAD1O00515 517 aa29.24■■■□□ 2.27
CPNE1-216ENST00000437340 FOXN1O15353 648 aa29.24■■■□□ 2.27
CPNE1-216ENST00000437340 ZNF543Q08ER8 600 aa29.24■■■□□ 2.27
CPNE1-216ENST00000437340 SH3RF1Q7Z6J0 888 aa29.24■■■□□ 2.27
CPNE1-216ENST00000437340 HOMER1Q86YM7 354 aa29.24■■■□□ 2.27
CPNE1-216ENST00000437340 NIM1KQ8IY84 436 aa29.24■■■□□ 2.27
CPNE1-216ENST00000437340 DNAJC18Q9H819 358 aa29.24■■■□□ 2.27
CPNE1-216ENST00000437340 SMCO2A6NFE2 343 aa29.23■■■□□ 2.27
CPNE1-216ENST00000437340 RASSF7Q02833 373 aa29.23■■■□□ 2.27
CPNE1-216ENST00000437340 GPATCH4Q5T3I0 446 aaKnown RBP29.23■■■□□ 2.27
CPNE1-216ENST00000437340 UBA5Q9GZZ9 404 aa29.23■■■□□ 2.27
CPNE1-216ENST00000437340 MAN1B1Q9UKM7 699 aa29.23■■■□□ 2.27
CPNE1-216ENST00000437340 LTBP3Q9NS15 1303 aa29.22■■■□□ 2.27
CPNE1-216ENST00000437340 MPHOSPH10O00566 681 aaKnown RBP29.22■■■□□ 2.27
CPNE1-216ENST00000437340 MYO1BO43795 1136 aa29.22■■■□□ 2.27
CPNE1-216ENST00000437340 ENTPD3O75355 529 aa29.22■■■□□ 2.27
CPNE1-216ENST00000437340 OFD1O75665 1012 aa29.22■■■□□ 2.27
CPNE1-216ENST00000437340 RAD17O75943 681 aa29.22■■■□□ 2.27
CPNE1-216ENST00000437340 SMC2O95347 1197 aa29.22■■■□□ 2.27
CPNE1-216ENST00000437340 MYL5Q02045 173 aa29.22■■■□□ 2.27
CPNE1-216ENST00000437340 ISM2Q6H9L7 571 aa29.22■■■□□ 2.27
CPNE1-216ENST00000437340 DHX58Q96C10 678 aa29.22■■■□□ 2.27
CPNE1-216ENST00000437340 DACH1Q9UI36 760 aa29.22■■■□□ 2.27
CPNE1-216ENST00000437340 COL2A1P02458 1487 aaPredicted RBP29.22■■■□□ 2.27
CPNE1-216ENST00000437340 FRMPD2Q68DX3 1309 aaPredicted RBP29.22■■■□□ 2.27
CPNE1-216ENST00000437340 ATRNL1Q5VV63 1379 aa29.21■■■□□ 2.27
CPNE1-216ENST00000437340 A0A087X0B3 334 aa29.21■■■□□ 2.27
CPNE1-216ENST00000437340 DDTLA6NHG4 134 aaPredicted RBP29.21■■■□□ 2.27
CPNE1-216ENST00000437340 CACNB3P54284 484 aa29.21■■■□□ 2.27
CPNE1-216ENST00000437340 EIF6P56537 245 aaKnown RBP29.21■■■□□ 2.27
CPNE1-216ENST00000437340 PDZRN4Q6ZMN7 1036 aaPredicted RBP29.21■■■□□ 2.27
CPNE1-216ENST00000437340 MLKLQ8NB16 471 aa29.21■■■□□ 2.27
CPNE1-216ENST00000437340 KCNF1Q9H3M0 494 aa29.21■■■□□ 2.27
CPNE1-216ENST00000437340 VAT1LQ9HCJ6 419 aa29.21■■■□□ 2.27
CPNE1-216ENST00000437340 ZNRF3Q9ULT6 936 aa29.21■■■□□ 2.27
CPNE1-216ENST00000437340 SIPA1L1O43166 1804 aa29.21■■■□□ 2.27
CPNE1-216ENST00000437340 TCP10Q12799 353 aa29.21■■■□□ 2.27
CPNE1-216ENST00000437340 MORC3Q14149 939 aa29.21■■■□□ 2.27
CPNE1-216ENST00000437340 CFAP100Q494V2 611 aa29.21■■■□□ 2.27
CPNE1-216ENST00000437340 TATDN1Q6P1N9 297 aa29.21■■■□□ 2.27
CPNE1-216ENST00000437340 SH3BP5LQ7L8J4 393 aa29.21■■■□□ 2.27
CPNE1-216ENST00000437340 CCDC186Q7Z3E2 898 aa29.21■■■□□ 2.27
CPNE1-216ENST00000437340 MKL1Q969V6 931 aa29.21■■■□□ 2.27
CPNE1-216ENST00000437340 PSMD14O00487 310 aa29.2■■■□□ 2.26
CPNE1-216ENST00000437340 PRR29P0C7W0 189 aa29.2■■■□□ 2.26
CPNE1-216ENST00000437340 PTGS1P23219 599 aa29.2■■■□□ 2.26
CPNE1-216ENST00000437340 ORC2Q13416 577 aaPredicted RBP29.2■■■□□ 2.26
CPNE1-216ENST00000437340 NONOQ15233 471 aaKnown RBP eCLIP29.2■■■□□ 2.26
CPNE1-216ENST00000437340 IL17AQ16552 155 aa29.2■■■□□ 2.26
CPNE1-216ENST00000437340 INF2Q27J81 1249 aa29.2■■■□□ 2.26
CPNE1-216ENST00000437340 CERKLQ49MI3 558 aaPredicted RBP29.2■■■□□ 2.26
CPNE1-216ENST00000437340 IQUBQ8NA54 791 aa29.2■■■□□ 2.26
CPNE1-216ENST00000437340 TRIM34Q9BYJ4 488 aa29.2■■■□□ 2.26
CPNE1-216ENST00000437340 BMP6P22004 513 aa29.19■■■□□ 2.26
CPNE1-216ENST00000437340 CT47A1Q5JQC4 288 aaPredicted RBP29.19■■■□□ 2.26
CPNE1-216ENST00000437340 PPP1R18Q6NYC8 613 aa29.19■■■□□ 2.26
CPNE1-216ENST00000437340 CLEC10AQ8IUN9 316 aa29.19■■■□□ 2.26
CPNE1-216ENST00000437340 ZSCAN29Q8IWY8 852 aaPredicted RBP29.19■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms