RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 COPB2P35606 906 aa13.46□□□□□ -0.25
COL28A1-203ENST00000435823 STAT2P52630 851 aa13.46□□□□□ -0.25
COL28A1-203ENST00000435823 CCDC96Q2M329 555 aa13.46□□□□□ -0.25
COL28A1-203ENST00000435823 RCSD1Q6JBY9 416 aa13.46□□□□□ -0.25
COL28A1-203ENST00000435823 FAM160B2Q86V87 743 aa13.46□□□□□ -0.25
COL28A1-203ENST00000435823 NCOA7Q8NI08 942 aa13.46□□□□□ -0.25
COL28A1-203ENST00000435823 PXYLP1Q8TE99 480 aa13.46□□□□□ -0.25
COL28A1-203ENST00000435823 SH3TC2Q8TF17 1288 aa13.46□□□□□ -0.25
COL28A1-203ENST00000435823 CHURC1Q8WUH1 139 aa13.46□□□□□ -0.25
COL28A1-203ENST00000435823 KIFC2Q96AC6 838 aa13.46□□□□□ -0.25
COL28A1-203ENST00000435823 CHMP4CQ96CF2 233 aa13.46□□□□□ -0.25
COL28A1-203ENST00000435823 ZNF333Q96JL9 665 aa13.46□□□□□ -0.25
COL28A1-203ENST00000435823 ZSCAN10Q96SZ4 725 aaPredicted RBP13.46□□□□□ -0.25
COL28A1-203ENST00000435823 MOV10L1Q9BXT6 1211 aaKnown RBP13.46□□□□□ -0.25
COL28A1-203ENST00000435823 MROH8Q9H579 483 aa13.46□□□□□ -0.25
COL28A1-203ENST00000435823 TNKSO95271 1327 aa13.45□□□□□ -0.26
COL28A1-203ENST00000435823 SLC25A27O95847 323 aa13.45□□□□□ -0.26
COL28A1-203ENST00000435823 FDX1P10109 184 aa13.45□□□□□ -0.26
COL28A1-203ENST00000435823 ERCC3P19447 782 aa13.45□□□□□ -0.26
COL28A1-203ENST00000435823 CYP2B6P20813 491 aa13.45□□□□□ -0.26
COL28A1-203ENST00000435823 STAT3P40763 770 aa13.45□□□□□ -0.26
COL28A1-203ENST00000435823 RGS2P41220 211 aa13.45□□□□□ -0.26
COL28A1-203ENST00000435823 UBXN2AP68543 259 aa13.45□□□□□ -0.26
COL28A1-203ENST00000435823 TMEM132BQ14DG7 1078 aa13.45□□□□□ -0.26
COL28A1-203ENST00000435823 NCAPG2Q86XI2 1143 aa13.45□□□□□ -0.26
COL28A1-203ENST00000435823 NKX2-3Q8TAU0 364 aa13.45□□□□□ -0.26
COL28A1-203ENST00000435823 TMEM106CQ9BVX2 250 aa13.45□□□□□ -0.26
COL28A1-203ENST00000435823 KAT14Q9H8E8 782 aa13.45□□□□□ -0.26
COL28A1-203ENST00000435823 ZSWIM5Q9P217 1185 aa13.45□□□□□ -0.26
COL28A1-203ENST00000435823 GJD2Q9UKL4 321 aa13.45□□□□□ -0.26
COL28A1-203ENST00000435823 DOCK3Q8IZD9 2030 aa13.45□□□□□ -0.26
COL28A1-203ENST00000435823 COL11A1P12107 1806 aaPredicted RBP13.44□□□□□ -0.26
COL28A1-203ENST00000435823 SLC15A5A6NIM6 579 aa13.44□□□□□ -0.26
COL28A1-203ENST00000435823 E7EWF7 191 aa13.44□□□□□ -0.26
COL28A1-203ENST00000435823 PLA2G6O60733 806 aa13.44□□□□□ -0.26
COL28A1-203ENST00000435823 ELNP15502 786 aa13.44□□□□□ -0.26
COL28A1-203ENST00000435823 PTPREP23469 700 aa13.44□□□□□ -0.26
COL28A1-203ENST00000435823 SOX10P56693 466 aa13.44□□□□□ -0.26
COL28A1-203ENST00000435823 SART3Q15020 963 aaKnown RBP13.44□□□□□ -0.26
COL28A1-203ENST00000435823 MORN1Q5T089 497 aa13.44□□□□□ -0.26
COL28A1-203ENST00000435823 RNF20Q5VTR2 975 aa13.44□□□□□ -0.26
COL28A1-203ENST00000435823 KCTD1Q719H9 257 aa13.44□□□□□ -0.26
COL28A1-203ENST00000435823 TRMT44Q8IYL2 757 aaKnown RBP13.44□□□□□ -0.26
COL28A1-203ENST00000435823 REPS2Q8NFH8 660 aa13.44□□□□□ -0.26
COL28A1-203ENST00000435823 TEX13BQ9BXU2 312 aa13.44□□□□□ -0.26
COL28A1-203ENST00000435823 ERICH2A1L162 156 aa13.43□□□□□ -0.26
COL28A1-203ENST00000435823 STRNO43815 780 aa13.43□□□□□ -0.26
COL28A1-203ENST00000435823 MYCP01106 439 aaPredicted RBP13.43□□□□□ -0.26
COL28A1-203ENST00000435823 XRCC5P13010 732 aaKnown RBP13.43□□□□□ -0.26
COL28A1-203ENST00000435823 OAZ1P54368 228 aa13.43□□□□□ -0.26
COL28A1-203ENST00000435823 MAP2K5Q13163 448 aa13.43□□□□□ -0.26
COL28A1-203ENST00000435823 GRB14Q14449 540 aa13.43□□□□□ -0.26
COL28A1-203ENST00000435823 IFIT1BQ5T764 474 aaKnown RBP13.43□□□□□ -0.26
COL28A1-203ENST00000435823 SNRNP48Q6IEG0 339 aaKnown RBP13.43□□□□□ -0.26
COL28A1-203ENST00000435823 RIOX2Q8IUF8 465 aa13.43□□□□□ -0.26
COL28A1-203ENST00000435823 ENAHQ8N8S7 591 aaPredicted RBP13.43□□□□□ -0.26
COL28A1-203ENST00000435823 PNMA1Q8ND90 353 aa13.43□□□□□ -0.26
COL28A1-203ENST00000435823 ANKS1AQ92625 1134 aa13.43□□□□□ -0.26
COL28A1-203ENST00000435823 APBA2Q99767 749 aa13.43□□□□□ -0.26
COL28A1-203ENST00000435823 SLC38A10Q9HBR0 1119 aa13.43□□□□□ -0.26
COL28A1-203ENST00000435823 ZNF214Q9UL59 606 aaPredicted RBP13.43□□□□□ -0.26
COL28A1-203ENST00000435823 PLXNB2O15031 1838 aa13.43□□□□□ -0.26
COL28A1-203ENST00000435823 FRMPD2Q68DX3 1309 aaPredicted RBP13.42□□□□□ -0.26
COL28A1-203ENST00000435823 SLC27A2O14975 620 aa13.42□□□□□ -0.26
COL28A1-203ENST00000435823 ATP2A1O14983 1001 aa13.42□□□□□ -0.26
COL28A1-203ENST00000435823 HMGCRP04035 888 aa13.42□□□□□ -0.26
COL28A1-203ENST00000435823 INHAP05111 366 aa13.42□□□□□ -0.26
COL28A1-203ENST00000435823 PDHBP11177 359 aa13.42□□□□□ -0.26
COL28A1-203ENST00000435823 FCER1AP12319 257 aa13.42□□□□□ -0.26
COL28A1-203ENST00000435823 ZKSCAN1P17029 563 aaPredicted RBP13.42□□□□□ -0.26
COL28A1-203ENST00000435823 SLC4A3P48751 1232 aa13.42□□□□□ -0.26
COL28A1-203ENST00000435823 CREB3L3Q68CJ9 461 aa13.42□□□□□ -0.26
COL28A1-203ENST00000435823 CYB5R4Q7L1T6 521 aa13.42□□□□□ -0.26
COL28A1-203ENST00000435823 RASGRP2Q7LDG7 609 aa13.42□□□□□ -0.26
COL28A1-203ENST00000435823 DPP9Q86TI2 863 aa13.42□□□□□ -0.26
COL28A1-203ENST00000435823 ABRAQ8N0Z2 381 aa13.42□□□□□ -0.26
COL28A1-203ENST00000435823 CPXCR1Q8N123 301 aa13.42□□□□□ -0.26
COL28A1-203ENST00000435823 USP6NLQ92738 828 aa13.42□□□□□ -0.26
COL28A1-203ENST00000435823 GPCPD1Q9NPB8 672 aa13.42□□□□□ -0.26
COL28A1-203ENST00000435823 SLC5A4Q9NY91 659 aa13.42□□□□□ -0.26
COL28A1-203ENST00000435823 IFIT3O14879 490 aaKnown RBP13.41□□□□□ -0.26
COL28A1-203ENST00000435823 SNHG28P0DPA3 235 aa13.41□□□□□ -0.26
COL28A1-203ENST00000435823 ADORA2AP29274 412 aa13.41□□□□□ -0.26
COL28A1-203ENST00000435823 ZNF543Q08ER8 600 aa13.41□□□□□ -0.26
COL28A1-203ENST00000435823 KCTD2Q14681 263 aa13.41□□□□□ -0.26
COL28A1-203ENST00000435823 NECTIN1Q15223 517 aa13.41□□□□□ -0.26
COL28A1-203ENST00000435823 GPATCH4Q5T3I0 446 aaKnown RBP13.41□□□□□ -0.26
COL28A1-203ENST00000435823 SYDE2Q5VT97 1194 aa13.41□□□□□ -0.26
COL28A1-203ENST00000435823 STOX1Q6ZVD7 989 aa13.41□□□□□ -0.26
COL28A1-203ENST00000435823 MMP19Q99542 508 aa13.41□□□□□ -0.26
COL28A1-203ENST00000435823 RAVER2Q9HCJ3 691 aaKnown RBP13.41□□□□□ -0.26
COL28A1-203ENST00000435823 PRR12Q9ULL5 1215 aa13.41□□□□□ -0.26
COL28A1-203ENST00000435823 TAF6LQ9Y6J9 622 aa13.41□□□□□ -0.26
COL28A1-203ENST00000435823 ZNF236Q9UL36 1845 aa13.41□□□□□ -0.26
COL28A1-203ENST00000435823 REC8O95072 547 aa13.4□□□□□ -0.26
COL28A1-203ENST00000435823 HOXC6P09630 235 aa13.4□□□□□ -0.26
COL28A1-203ENST00000435823 CCL5P13501 91 aa13.4□□□□□ -0.26
COL28A1-203ENST00000435823 SLC16A2P36021 539 aa13.4□□□□□ -0.26
COL28A1-203ENST00000435823 WTAPQ15007 396 aa13.4□□□□□ -0.26
COL28A1-203ENST00000435823 MTFR1Q15390 333 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms