RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 RTN1Q16799 776 aa14.11□□□□□ -0.15
LINC00539-202ENST00000423575 BTNL9Q6UXG8 535 aa14.11□□□□□ -0.15
LINC00539-202ENST00000423575 FAM160B2Q86V87 743 aa14.11□□□□□ -0.15
LINC00539-202ENST00000423575 FANCBQ8NB91 859 aa14.11□□□□□ -0.15
LINC00539-202ENST00000423575 CTCFLQ8NI51 663 aaPredicted RBP14.11□□□□□ -0.15
LINC00539-202ENST00000423575 SMCR8Q8TEV9 937 aaPredicted RBP14.11□□□□□ -0.15
LINC00539-202ENST00000423575 KIFC2Q96AC6 838 aa14.11□□□□□ -0.15
LINC00539-202ENST00000423575 UBA5Q9GZZ9 404 aa14.11□□□□□ -0.15
LINC00539-202ENST00000423575 WBP1LQ9NX94 342 aa14.11□□□□□ -0.15
LINC00539-202ENST00000423575 KLRF2D3W0D1 207 aa14.1□□□□□ -0.15
LINC00539-202ENST00000423575 PEX10O60683 326 aa14.1□□□□□ -0.15
LINC00539-202ENST00000423575 PLEKHA8P1O95397 391 aa14.1□□□□□ -0.15
LINC00539-202ENST00000423575 CD2BP2O95400 341 aaKnown RBP14.1□□□□□ -0.15
LINC00539-202ENST00000423575 CDC27P30260 824 aa14.1□□□□□ -0.15
LINC00539-202ENST00000423575 KIF5BP33176 963 aa14.1□□□□□ -0.15
LINC00539-202ENST00000423575 METAP2P50579 478 aaKnown RBP eCLIP14.1□□□□□ -0.15
LINC00539-202ENST00000423575 SYDE2Q5VT97 1194 aa14.1□□□□□ -0.15
LINC00539-202ENST00000423575 LBX2Q6XYB7 198 aa14.1□□□□□ -0.15
LINC00539-202ENST00000423575 NBPF11Q86T75 865 aa14.1□□□□□ -0.15
LINC00539-202ENST00000423575 PRPF38AQ8NAV1 312 aaKnown RBP14.1□□□□□ -0.15
LINC00539-202ENST00000423575 CHURC1Q8WUH1 139 aa14.1□□□□□ -0.15
LINC00539-202ENST00000423575 ZNF274Q96GC6 653 aaPredicted RBP14.1□□□□□ -0.15
LINC00539-202ENST00000423575 ZFYVE28Q9HCC9 887 aa14.1□□□□□ -0.15
LINC00539-202ENST00000423575 FAM217BQ9NTX9 383 aaPredicted RBP14.1□□□□□ -0.15
LINC00539-202ENST00000423575 PRR12Q9ULL5 1215 aa14.1□□□□□ -0.15
LINC00539-202ENST00000423575 ADAMTS5Q9UNA0 930 aa14.1□□□□□ -0.15
LINC00539-202ENST00000423575 RLFQ13129 1914 aa14.09□□□□□ -0.15
LINC00539-202ENST00000423575 VWA5AO00534 786 aa14.09□□□□□ -0.15
LINC00539-202ENST00000423575 ST18O60284 1047 aa14.09□□□□□ -0.15
LINC00539-202ENST00000423575 TLR2O60603 784 aa14.09□□□□□ -0.15
LINC00539-202ENST00000423575 CNMDO75829 334 aa14.09□□□□□ -0.15
LINC00539-202ENST00000423575 TBC1D8O95759 1140 aa14.09□□□□□ -0.15
LINC00539-202ENST00000423575 SNAP25P60880 206 aa14.09□□□□□ -0.15
LINC00539-202ENST00000423575 CCT2P78371 535 aaKnown RBP14.09□□□□□ -0.15
LINC00539-202ENST00000423575 STK3Q13188 491 aa14.09□□□□□ -0.15
LINC00539-202ENST00000423575 TMTC3Q6ZXV5 915 aa14.09□□□□□ -0.15
LINC00539-202ENST00000423575 REPS2Q8NFH8 660 aa14.09□□□□□ -0.15
LINC00539-202ENST00000423575 CFHR5Q9BXR6 569 aa14.09□□□□□ -0.15
LINC00539-202ENST00000423575 NCOA5Q9HCD5 579 aaKnown RBP14.09□□□□□ -0.15
LINC00539-202ENST00000423575 TXNRD2Q9NNW7 524 aa14.09□□□□□ -0.15
LINC00539-202ENST00000423575 SAGE1Q9NXZ1 904 aa14.09□□□□□ -0.15
LINC00539-202ENST00000423575 HOXC10Q9NYD6 342 aa14.09□□□□□ -0.15
LINC00539-202ENST00000423575 CPA4Q9UI42 421 aa14.09□□□□□ -0.15
LINC00539-202ENST00000423575 A0A0G2JMZ2 1700 aa14.08□□□□□ -0.16
LINC00539-202ENST00000423575 CYTH3O43739 400 aa14.08□□□□□ -0.16
LINC00539-202ENST00000423575 PFKFB2O60825 505 aa14.08□□□□□ -0.16
LINC00539-202ENST00000423575 BCRP11274 1271 aa14.08□□□□□ -0.16
LINC00539-202ENST00000423575 GCLCP48506 637 aaPredicted RBP14.08□□□□□ -0.16
LINC00539-202ENST00000423575 GNAQP50148 359 aa14.08□□□□□ -0.16
LINC00539-202ENST00000423575 ME3Q16798 604 aa14.08□□□□□ -0.16
LINC00539-202ENST00000423575 C17orf99Q6UX52 265 aa14.08□□□□□ -0.16
LINC00539-202ENST00000423575 ADGRF4Q8IZF3 695 aa14.08□□□□□ -0.16
LINC00539-202ENST00000423575 CMTR1Q8N1G2 835 aaKnown RBP14.08□□□□□ -0.16
LINC00539-202ENST00000423575 SRBD1Q8N5C6 995 aaKnown RBP14.08□□□□□ -0.16
LINC00539-202ENST00000423575 ANKRD13CQ8N6S4 541 aa14.08□□□□□ -0.16
LINC00539-202ENST00000423575 GTF3C2Q8WUA4 911 aaPredicted RBP14.08□□□□□ -0.16
LINC00539-202ENST00000423575 PAGR1Q9BTK6 254 aa14.08□□□□□ -0.16
LINC00539-202ENST00000423575 SLC38A10Q9HBR0 1119 aa14.08□□□□□ -0.16
LINC00539-202ENST00000423575 RBM28Q9NW13 759 aaKnown RBP14.08□□□□□ -0.16
LINC00539-202ENST00000423575 BTBD7Q9P203 1132 aa14.08□□□□□ -0.16
LINC00539-202ENST00000423575 RBPJLQ9UBG7 517 aa14.08□□□□□ -0.16
LINC00539-202ENST00000423575 TSKSQ9UJT2 592 aa14.08□□□□□ -0.16
LINC00539-202ENST00000423575 LIMCH1Q9UPQ0 1083 aa14.08□□□□□ -0.16
LINC00539-202ENST00000423575 PARP14Q460N5 1801 aa14.07□□□□□ -0.16
LINC00539-202ENST00000423575 DHX16O60231 1041 aaKnown RBP14.07□□□□□ -0.16
LINC00539-202ENST00000423575 ADD1P35611 737 aaKnown RBP14.07□□□□□ -0.16
LINC00539-202ENST00000423575 FUT2Q10981 343 aa14.07□□□□□ -0.16
LINC00539-202ENST00000423575 ST3GAL1Q11201 340 aa14.07□□□□□ -0.16
LINC00539-202ENST00000423575 TMEM132BQ14DG7 1078 aa14.07□□□□□ -0.16
LINC00539-202ENST00000423575 MB21D1Q8N884 522 aa14.07□□□□□ -0.16
LINC00539-202ENST00000423575 NECAB1Q8N987 351 aa14.07□□□□□ -0.16
LINC00539-202ENST00000423575 IL27Q8NEV9 243 aa14.07□□□□□ -0.16
LINC00539-202ENST00000423575 LZTS2Q9BRK4 669 aa14.07□□□□□ -0.16
LINC00539-202ENST00000423575 BEGAINQ9BUH8 593 aa14.07□□□□□ -0.16
LINC00539-202ENST00000423575 SPZ1Q9BXG8 430 aa14.07□□□□□ -0.16
LINC00539-202ENST00000423575 SLKQ9H2G2 1235 aaPredicted RBP14.07□□□□□ -0.16
LINC00539-202ENST00000423575 RANBP17Q9H2T7 1088 aaKnown RBP14.07□□□□□ -0.16
LINC00539-202ENST00000423575 RIOX1Q9H6W3 641 aa14.07□□□□□ -0.16
LINC00539-202ENST00000423575 JMJD4Q9H9V9 463 aa14.07□□□□□ -0.16
LINC00539-202ENST00000423575 MORF4L1Q9UBU8 362 aa14.07□□□□□ -0.16
LINC00539-202ENST00000423575 RABGAP1Q9Y3P9 1069 aa14.07□□□□□ -0.16
LINC00539-202ENST00000423575 CNTNAP5Q8WYK1 1306 aa14.07□□□□□ -0.16
LINC00539-202ENST00000423575 ZBED4O75132 1171 aa14.06□□□□□ -0.16
LINC00539-202ENST00000423575 TAL1P17542 331 aaPredicted RBP14.06□□□□□ -0.16
LINC00539-202ENST00000423575 SCRN1Q12765 414 aa14.06□□□□□ -0.16
LINC00539-202ENST00000423575 PPP2R5BQ15173 497 aa14.06□□□□□ -0.16
LINC00539-202ENST00000423575 CDC37Q16543 378 aaPredicted RBP14.06□□□□□ -0.16
LINC00539-202ENST00000423575 FAM110CQ1W6H9 321 aa14.06□□□□□ -0.16
LINC00539-202ENST00000423575 CCDC174Q6PII3 467 aa14.06□□□□□ -0.16
LINC00539-202ENST00000423575 CCDC82Q8N4S0 544 aa14.06□□□□□ -0.16
LINC00539-202ENST00000423575 MTMR8Q96EF0 704 aa14.06□□□□□ -0.16
LINC00539-202ENST00000423575 RAVER2Q9HCJ3 691 aaKnown RBP14.06□□□□□ -0.16
LINC00539-202ENST00000423575 VAT1LQ9HCJ6 419 aa14.06□□□□□ -0.16
LINC00539-202ENST00000423575 ZNF214Q9UL59 606 aaPredicted RBP14.06□□□□□ -0.16
LINC00539-202ENST00000423575 ZNF536O15090 1300 aa14.06□□□□□ -0.16
LINC00539-202ENST00000423575 CCDC196A0A1B0GTZ2 297 aa14.05□□□□□ -0.16
LINC00539-202ENST00000423575 PPFIA3O75145 1194 aa14.05□□□□□ -0.16
LINC00539-202ENST00000423575 FDX1P10109 184 aa14.05□□□□□ -0.16
LINC00539-202ENST00000423575 SMARCA1P28370 1054 aa14.05□□□□□ -0.16
LINC00539-202ENST00000423575 ERVK-9P63128 1117 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms