RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 LRRCC1Q9C099 1032 aa9.72□□□□□ -0.85
VIM-202ENST00000421459 EPB41L4AQ9HCS5 686 aaPredicted RBP9.72□□□□□ -0.85
VIM-202ENST00000421459 TMEM39AQ9NV64 488 aa9.72□□□□□ -0.85
VIM-202ENST00000421459 ZHX1Q9UKY1 873 aaPredicted RBP9.72□□□□□ -0.85
VIM-202ENST00000421459 TACC3Q9Y6A5 838 aa9.72□□□□□ -0.85
VIM-202ENST00000421459 DDX49Q9Y6V7 483 aaKnown RBP9.72□□□□□ -0.85
VIM-202ENST00000421459 LTBP2Q14767 1821 aa9.72□□□□□ -0.85
VIM-202ENST00000421459 ZNF236Q9UL36 1845 aa9.72□□□□□ -0.85
VIM-202ENST00000421459 M0R2C6 588 aa9.71□□□□□ -0.86
VIM-202ENST00000421459 KIAA0355O15063 1070 aa9.71□□□□□ -0.86
VIM-202ENST00000421459 AKR1A1P14550 325 aa9.71□□□□□ -0.86
VIM-202ENST00000421459 RAG1P15918 1043 aa9.71□□□□□ -0.86
VIM-202ENST00000421459 ACLYP53396 1101 aa9.71□□□□□ -0.86
VIM-202ENST00000421459 SMAD3P84022 425 aaKnown RBP9.71□□□□□ -0.86
VIM-202ENST00000421459 DIEXFQ68CQ4 756 aaKnown RBP9.71□□□□□ -0.86
VIM-202ENST00000421459 CCSAPQ6IQ19 270 aaPredicted RBP9.71□□□□□ -0.86
VIM-202ENST00000421459 LRRC47Q8N1G4 583 aaKnown RBP9.71□□□□□ -0.86
VIM-202ENST00000421459 KLHDC9Q8NEP7 349 aa9.71□□□□□ -0.86
VIM-202ENST00000421459 KIFC2Q96AC6 838 aa9.71□□□□□ -0.86
VIM-202ENST00000421459 DDX11Q96FC9 970 aa9.71□□□□□ -0.86
VIM-202ENST00000421459 DDRGK1Q96HY6 314 aa9.71□□□□□ -0.86
VIM-202ENST00000421459 RNPC3Q96LT9 517 aaKnown RBP9.71□□□□□ -0.86
VIM-202ENST00000421459 FGD4Q96M96 766 aa9.71□□□□□ -0.86
VIM-202ENST00000421459 SEC62Q99442 399 aaKnown RBP9.71□□□□□ -0.86
VIM-202ENST00000421459 MKNK2Q9HBH9 465 aa9.71□□□□□ -0.86
VIM-202ENST00000421459 NRBP1Q9UHY1 535 aa9.71□□□□□ -0.86
VIM-202ENST00000421459 CNPY2Q9Y2B0 182 aa9.71□□□□□ -0.86
VIM-202ENST00000421459 DIS3Q9Y2L1 958 aaKnown RBP9.71□□□□□ -0.86
VIM-202ENST00000421459 SYNRGQ9UMZ2 1314 aa9.71□□□□□ -0.86
VIM-202ENST00000421459 DNAJC25-GNG10A0A024R161 153 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 IGKV6D-41A0A0C4DH26 115 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 GRXCR1A8MXD5 290 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 MS4A1P11836 297 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 SNAP25P60880 206 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 CNTN2Q02246 1040 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 GRIN2CQ14957 1233 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 SBK1Q52WX2 424 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 ZSCAN25Q6NSZ9 544 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 C16orf59Q7L2K0 433 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 CEP95Q96GE4 821 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 TEX13BQ9BXU2 312 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 INCENPQ9NQS7 918 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 STARD7Q9NQZ5 370 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 ECHDC1Q9NTX5 307 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 NYAP2Q9P242 653 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 ARPP21Q9UBL0 812 aaPredicted RBP9.7□□□□□ -0.86
VIM-202ENST00000421459 FAM184BQ9ULE4 1060 aa9.7□□□□□ -0.86
VIM-202ENST00000421459 BAZ2AQ9UIF9 1905 aaKnown RBP9.7□□□□□ -0.86
VIM-202ENST00000421459 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.69□□□□□ -0.86
VIM-202ENST00000421459 RNF113AO15541 343 aaKnown RBP9.69□□□□□ -0.86
VIM-202ENST00000421459 ZBED4O75132 1171 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 APPP05067 770 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 ASGR1P07306 291 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 ACRP10323 421 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 FOSL2P15408 326 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 PBX2P40425 430 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 FPGSQ05932 587 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 ACVR2BQ13705 512 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 TMEM63BQ5T3F8 832 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 MAMDC4Q6UXC1 1216 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 RASGRP2Q7LDG7 609 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 ANKRD33Q7Z3H0 272 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 KBTBD3Q8NAB2 608 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 PRPF38AQ8NAV1 312 aaKnown RBP9.69□□□□□ -0.86
VIM-202ENST00000421459 USP38Q8NB14 1042 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 VTI1AQ96AJ9 217 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.69□□□□□ -0.86
VIM-202ENST00000421459 PRDM6Q9NQX0 595 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 HOMER2Q9NSB8 354 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.69□□□□□ -0.86
VIM-202ENST00000421459 RCAN3Q9UKA8 241 aa9.69□□□□□ -0.86
VIM-202ENST00000421459 COL11A1P12107 1806 aaPredicted RBP9.68□□□□□ -0.86
VIM-202ENST00000421459 SYNGAP1Q96PV0 1343 aa9.68□□□□□ -0.86
VIM-202ENST00000421459 DCDC2CA8MYV0 355 aa9.68□□□□□ -0.86
VIM-202ENST00000421459 CTAGE5O15320 804 aa9.68□□□□□ -0.86
VIM-202ENST00000421459 GPAA1O43292 621 aa9.68□□□□□ -0.86
VIM-202ENST00000421459 TIMP1P01033 207 aa9.68□□□□□ -0.86
VIM-202ENST00000421459 C6orf222P0C671 652 aaPredicted RBP9.68□□□□□ -0.86
VIM-202ENST00000421459 TDO2P48775 406 aa9.68□□□□□ -0.86
VIM-202ENST00000421459 BEX3Q00994 111 aa9.68□□□□□ -0.86
VIM-202ENST00000421459 CCDC144BQ3MJ40 725 aa9.68□□□□□ -0.86
VIM-202ENST00000421459 IFNL3Q8IZI9 196 aa9.68□□□□□ -0.86
VIM-202ENST00000421459 ZNF444Q8N0Y2 327 aaPredicted RBP9.68□□□□□ -0.86
VIM-202ENST00000421459 ANKRD35Q8N283 1001 aa9.68□□□□□ -0.86
VIM-202ENST00000421459 OTUD7AQ8TE49 926 aaPredicted RBP9.68□□□□□ -0.86
VIM-202ENST00000421459 APPBP2Q92624 585 aa9.68□□□□□ -0.86
VIM-202ENST00000421459 MKL1Q969V6 931 aa9.68□□□□□ -0.86
VIM-202ENST00000421459 AGBL1Q96MI9 1066 aa9.68□□□□□ -0.86
VIM-202ENST00000421459 PURBQ96QR8 312 aaKnown RBP9.68□□□□□ -0.86
VIM-202ENST00000421459 TSEN34Q9BSV6 310 aaKnown RBP9.68□□□□□ -0.86
VIM-202ENST00000421459 PPP1R12CQ9BZL4 782 aa9.68□□□□□ -0.86
VIM-202ENST00000421459 SLC38A10Q9HBR0 1119 aa9.68□□□□□ -0.86
VIM-202ENST00000421459 MTMR4Q9NYA4 1195 aa9.68□□□□□ -0.86
VIM-202ENST00000421459 ISY1Q9ULR0 285 aaKnown RBP9.68□□□□□ -0.86
VIM-202ENST00000421459 CTDP1Q9Y5B0 961 aaPredicted RBP9.68□□□□□ -0.86
VIM-202ENST00000421459 ROBO3Q96MS0 1386 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 XIRP2A4UGR9 3374 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 MUC3AQ02505 3323 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 ASTN1O14525 1302 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 SOWAHBA6NEL2 793 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms