RNA–Protein interactions for RNA: ENST00000421141.5

PTCH1-206, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,659 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-206ENST00000421141 RAPGEF1Q13905 1077 aa11.96□□□□□ -0.5
PTCH1-206ENST00000421141 CCDC50Q8IVM0 306 aa11.96□□□□□ -0.5
PTCH1-206ENST00000421141 SEC62Q99442 399 aaKnown RBP11.96□□□□□ -0.5
PTCH1-206ENST00000421141 LRFN2Q9ULH4 789 aa11.96□□□□□ -0.5
PTCH1-206ENST00000421141 CHD2O14647 1828 aaKnown RBP11.96□□□□□ -0.5
PTCH1-206ENST00000421141 LMNB1P20700 586 aa11.96□□□□□ -0.5
PTCH1-206ENST00000421141 LIG4P49917 911 aa11.96□□□□□ -0.5
PTCH1-206ENST00000421141 KRT40Q6A162 431 aa11.96□□□□□ -0.5
PTCH1-206ENST00000421141 TICAM2Q86XR7 235 aa11.96□□□□□ -0.5
PTCH1-206ENST00000421141 GIMAP8Q8ND71 665 aaPredicted RBP11.96□□□□□ -0.5
PTCH1-206ENST00000421141 SH3RF3Q8TEJ3 882 aaPredicted RBP11.96□□□□□ -0.5
PTCH1-206ENST00000421141 CELF1Q92879 486 aaKnown RBP11.96□□□□□ -0.5
PTCH1-206ENST00000421141 CRACR2AQ9BSW2 395 aa11.96□□□□□ -0.5
PTCH1-206ENST00000421141 STAP2Q9UGK3 403 aa11.96□□□□□ -0.5
PTCH1-206ENST00000421141 ZSCAN23Q3MJ62 389 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 VWA3BQ502W6 1294 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 STRIP1Q5VSL9 837 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 USP17L2Q6R6M4 530 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 MTERF4Q7Z6M4 381 aaKnown RBP11.95□□□□□ -0.5
PTCH1-206ENST00000421141 CMTR1Q8N1G2 835 aaKnown RBP11.95□□□□□ -0.5
PTCH1-206ENST00000421141 ATP6V0A2Q9Y487 856 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 TDRD3Q9H7E2 651 aaKnown RBP11.95□□□□□ -0.5
PTCH1-206ENST00000421141 CNOT7Q9UIV1 285 aaKnown RBP11.95□□□□□ -0.5
PTCH1-206ENST00000421141 FAM160A1Q05DH4 1040 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 LCORLQ8N3X6 602 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 UBXN4Q92575 508 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 BCRP11274 1271 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 PNMA8AQ86V59 439 aaPredicted RBP11.95□□□□□ -0.5
PTCH1-206ENST00000421141 FAM200AQ8TCP9 573 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 KRT83P78385 493 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 TSGA10Q9BZW7 698 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 TLR7Q9NYK1 1049 aaKnown RBP11.95□□□□□ -0.5
PTCH1-206ENST00000421141 GH2P01242 217 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 TNNI1P19237 187 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 TECP42680 631 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 DYDC1Q8WWB3 177 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 GPKOWQ92917 476 aaPredicted RBP eCLIP11.95□□□□□ -0.5
PTCH1-206ENST00000421141 RASAL2Q9UJF2 1139 aa11.95□□□□□ -0.5
PTCH1-206ENST00000421141 ZHX1Q9UKY1 873 aaPredicted RBP11.95□□□□□ -0.5
PTCH1-206ENST00000421141 MROH7-TTC4A0A0A0MT08 1334 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 TMEM110-MUSTN1A8MSY1 372 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 GNA14O95837 355 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 MYCP01106 439 aaPredicted RBP11.94□□□□□ -0.5
PTCH1-206ENST00000421141 GNAT1P11488 350 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 COPB2P35606 906 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 DCAF4Q8WV16 495 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 ISCA1Q9BUE6 129 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 NOC4LQ9BVI4 516 aaKnown RBP11.94□□□□□ -0.5
PTCH1-206ENST00000421141 HERC5Q9UII4 1024 aaKnown RBP11.94□□□□□ -0.5
PTCH1-206ENST00000421141 FEM1BQ9UK73 627 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 RAD51AP2Q09MP3 1159 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 PPP2R5AQ15172 486 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 OTUD6BQ8N6M0 293 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 EXOC3O60645 756 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 MCAMP43121 646 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 PRR5LQ6MZQ0 368 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 CCDC42Q96M95 316 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 PSMD1Q99460 953 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 FBXO40Q9UH90 709 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 VWDEQ8N2E2 1590 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 STX17P56962 302 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 INF2Q27J81 1249 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 MFSD14CQ5VZR4 134 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 GSTA5Q7RTV2 222 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 SREK1Q8WXA9 508 aaKnown RBP11.94□□□□□ -0.5
PTCH1-206ENST00000421141 TBC1D7Q9P0N9 293 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 LAD1O00515 517 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 OR52Z1P0C646 297 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 ZSCAN20P17040 1043 aaPredicted RBP11.94□□□□□ -0.5
PTCH1-206ENST00000421141 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.94□□□□□ -0.5
PTCH1-206ENST00000421141 NALCNQ8IZF0 1738 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 HLTFQ14527 1009 aaKnown RBP eCLIP11.94□□□□□ -0.5
PTCH1-206ENST00000421141 CCDC14Q49A88 953 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 NOSTRINQ8IVI9 506 aa11.94□□□□□ -0.5
PTCH1-206ENST00000421141 TYRO3Q06418 890 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 KIF5AQ12840 1032 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 LIN9Q5TKA1 542 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 SLF1Q9BQI6 1058 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 CCDC113Q9H0I3 377 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 KCNH4Q9UQ05 1017 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 USP17L10C9JJH3 530 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 PTGS1P23219 599 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 GPBP1Q86WP2 473 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 TTC14Q96N46 770 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 WDR70Q9NW82 654 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 PARP4Q9UKK3 1724 aaKnown RBP11.93□□□□□ -0.5
PTCH1-206ENST00000421141 SYNRGQ9UMZ2 1314 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 LRRIQ4A6NIV6 560 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 TNNC2P02585 160 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 PROCA1Q8NCQ7 364 aaPredicted RBP11.93□□□□□ -0.5
PTCH1-206ENST00000421141 RNF216Q9NWF9 866 aaPredicted RBP11.93□□□□□ -0.5
PTCH1-206ENST00000421141 FSD2A1L4K1 749 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 TGFB2P61812 414 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 ODR4Q5SWX8 454 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 MICALL2Q8IY33 904 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 TRMT2AQ8IZ69 625 aaKnown RBP11.93□□□□□ -0.5
PTCH1-206ENST00000421141 SLC7A3Q8WY07 619 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 BBXQ8WY36 941 aaPredicted RBP11.93□□□□□ -0.5
PTCH1-206ENST00000421141 AGTPBP1Q9UPW5 1226 aa11.93□□□□□ -0.5
PTCH1-206ENST00000421141 XPOTO43592 962 aaKnown RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms