RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 NEMFO60524 1076 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 PRPHP41219 470 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 DPY19L2Q6NUT2 758 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.52□□□□□ -0.89
USP54-203ENST00000418501 FBXO11Q86XK2 927 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 QSER1Q2KHR3 1735 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 A0A1B0GVL5 298 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 MCM7P33993 719 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 NLRP12P59046 1061 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 ZNF174Q15697 407 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 GRIK5Q16478 980 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 ANO6Q4KMQ2 910 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 CMTR1Q8N1G2 835 aaKnown RBP9.52□□□□□ -0.89
USP54-203ENST00000418501 MLKLQ8NB16 471 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 IL17RBQ9NRM6 502 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 KIAA1468Q9P260 1216 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 ATRNL1Q5VV63 1379 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 NR1I2O75469 434 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 PDHBP11177 359 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 SYDE2Q5VT97 1194 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 ARHGAP27Q6ZUM4 889 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 GMCL1Q96IK5 515 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 PGBD1Q96JS3 809 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 ZMYND12Q9H0C1 365 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 PSTPIP2Q9H939 334 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 MYOZ2Q9NPC6 264 aa9.52□□□□□ -0.89
USP54-203ENST00000418501 SHMT1P34896 483 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 STAT6P42226 847 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 RRAGBQ5VZM2 374 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 USP17L2Q6R6M4 530 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 KRBA2Q6ZNG9 492 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 MCF2L2Q86YR7 1114 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 SAMD3Q8N6K7 520 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 AIFM3Q96NN9 605 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 ZNF341Q9BYN7 854 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 RIOX1Q9H6W3 641 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 USP17L5A8MUK1 530 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 EEF2P13639 858 aaKnown RBP9.51□□□□□ -0.89
USP54-203ENST00000418501 KRT79Q5XKE5 535 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 PIGSQ96S52 555 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 FEM1BQ9UK73 627 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 CLRN2A0PK11 232 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 KIF28PB7ZC32 967 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 FGFR1OPO95684 399 aaKnown RBP9.51□□□□□ -0.89
USP54-203ENST00000418501 OR52Z1P0C646 297 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 CXCL9Q07325 125 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 SLFN12Q8IYM2 578 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 LPAR1Q92633 364 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 RBSNQ9H1K0 784 aa9.51□□□□□ -0.89
USP54-203ENST00000418501 LMNB1P20700 586 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 STAT2P52630 851 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 TATDN1Q6P1N9 297 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 MXD3Q9BW11 206 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 TMOD4Q9NZQ9 345 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 FRMPD2Q68DX3 1309 aaPredicted RBP9.5□□□□□ -0.89
USP54-203ENST00000418501 B4DLN1 442 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 ZBED4O75132 1171 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 GH2P01242 217 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 GOLGA8HP0CJ92 632 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 SPAG1Q07617 926 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 FMR1NBQ8N0W7 255 aaPredicted RBP9.5□□□□□ -0.89
USP54-203ENST00000418501 MPHOSPH6Q99547 160 aaKnown RBP9.5□□□□□ -0.89
USP54-203ENST00000418501 RIC8AQ9NPQ8 531 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 KDM3AQ9Y4C1 1321 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 VWA3AA6NCI4 1184 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 ATP2C1P98194 919 aaPredicted RBP9.5□□□□□ -0.89
USP54-203ENST00000418501 PKN1Q16512 942 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 LETM2Q2VYF4 491 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 WWC2Q6AWC2 1192 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 PRMT6Q96LA8 375 aaPredicted RBP9.5□□□□□ -0.89
USP54-203ENST00000418501 PPP1R9BQ96SB3 815 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 DDX4Q9NQI0 724 aaKnown RBP9.5□□□□□ -0.89
USP54-203ENST00000418501 KIAA1551Q9HCM1 1747 aa9.5□□□□□ -0.89
USP54-203ENST00000418501 STXBP3O00186 592 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 CCP110O43303 1012 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 CCNT1O60563 726 aaKnown RBP9.49□□□□□ -0.89
USP54-203ENST00000418501 NDUFA8P51970 172 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 PTGDRQ13258 359 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 NR5A1Q13285 461 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 POSTNQ15063 836 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 HAUS3Q68CZ6 603 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 RBM43Q6ZSC3 357 aaKnown RBP9.49□□□□□ -0.89
USP54-203ENST00000418501 GPKOWQ92917 476 aaPredicted RBP eCLIP9.49□□□□□ -0.89
USP54-203ENST00000418501 NT5C3AQ9H0P0 336 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 PCDHA1Q9Y5I3 950 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 A0A1B0GUL6 1792 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 IGKV6D-41A0A0C4DH26 115 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 TMEM232C9JQI7 657 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 F5H6K3 240 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 GUCY1A2P33402 732 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 GSDMDP57764 484 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 KLRC3Q07444 240 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 FUT2Q10981 343 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 SEPT2Q15019 361 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 KIF4BQ2VIQ3 1234 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 KCTD17Q8N5Z5 321 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 BPIFA3Q9BQP9 254 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 MAGEC2Q9UBF1 373 aaPredicted RBP9.49□□□□□ -0.89
USP54-203ENST00000418501 FAM198AQ9UFP1 575 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 CALCRLQ16602 461 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms