RNA–Protein interactions for RNA: ENST00000409672.5

SCN9A-203, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SCN9A, Length 9,768 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-203ENST00000409672 CHURC1Q8WUH1 139 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 DDX25Q9UHL0 483 aaKnown RBP9.26□□□□□ -0.93
SCN9A-203ENST00000409672 RAD50Q92878 1312 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 MMTAG2Q9BU76 263 aaKnown RBP9.26□□□□□ -0.93
SCN9A-203ENST00000409672 PCDHB4Q9Y5E5 795 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 PGBD3Q8N328 593 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 U2AF1L4Q8WU68 220 aaKnown RBP9.26□□□□□ -0.93
SCN9A-203ENST00000409672 NELFBQ8WX92 580 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 TNNC1P63316 161 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 SNX25Q9H3E2 840 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 PCIF1Q9H4Z3 704 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 BUB1O43683 1085 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 UPP2O95045 317 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 DEXIO95424 95 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 VAV2P52735 878 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 DYNLT1P63172 113 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 PARP10Q53GL7 1025 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 PPM1KQ8N3J5 372 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 CCNYQ8ND76 341 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 LINS1Q8NG48 757 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 DDX27Q96GQ7 796 aaKnown RBP9.26□□□□□ -0.93
SCN9A-203ENST00000409672 AGRPO00253 132 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 NVLO15381 856 aaKnown RBP9.26□□□□□ -0.93
SCN9A-203ENST00000409672 CTSWP56202 376 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 JADE1Q6IE81 842 aa9.26□□□□□ -0.93
SCN9A-203ENST00000409672 DALRD3Q5D0E6 543 aaKnown RBP9.25□□□□□ -0.93
SCN9A-203ENST00000409672 RRAGAQ7L523 313 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 FBXO11Q86XK2 927 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 EXT2Q93063 718 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 DDX21Q9NR30 783 aaKnown RBP eCLIP9.25□□□□□ -0.93
SCN9A-203ENST00000409672 ZNF277Q9NRM2 450 aaPredicted RBP9.25□□□□□ -0.93
SCN9A-203ENST00000409672 PALD1Q9ULE6 856 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 NEMP1O14524 444 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 UHRF1BP1Q6BDS2 1440 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 KDM5BQ9UGL1 1544 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 ICA1Q05084 483 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 ACCSLQ4AC99 568 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 ZBTB41Q5SVQ8 909 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 PANK4Q9NVE7 773 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 NXF1Q9UBU9 619 aaKnown RBP9.25□□□□□ -0.93
SCN9A-203ENST00000409672 PCDHA12Q9UN75 941 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 ERBB3P21860 1342 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 NEMFO60524 1076 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 ANGEL1Q9UNK9 670 aaKnown RBP9.25□□□□□ -0.93
SCN9A-203ENST00000409672 MEIS1O00470 390 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 METTL22Q9BUU2 404 aaPredicted RBP9.25□□□□□ -0.93
SCN9A-203ENST00000409672 RPS8P62241 208 aaKnown RBP9.25□□□□□ -0.93
SCN9A-203ENST00000409672 SPAG1Q07617 926 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 SMAD1Q15797 465 aaKnown RBP9.25□□□□□ -0.93
SCN9A-203ENST00000409672 PLA2G4DQ86XP0 818 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 H7C0C1 242 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 I3L4J1 428 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 MX2P20592 715 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 ATP5OP48047 213 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 CACNB1Q02641 598 aaPredicted RBP9.25□□□□□ -0.93
SCN9A-203ENST00000409672 NAA35Q5VZE5 725 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 ARMCX5Q6P1M9 558 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 REXO1Q8N1G1 1221 aaKnown RBP9.25□□□□□ -0.93
SCN9A-203ENST00000409672 HESX1Q9UBX0 185 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 SLC27A2O14975 620 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 PDZD8Q8NEN9 1154 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 LPIN2Q92539 896 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 IP6K1Q92551 441 aa9.25□□□□□ -0.93
SCN9A-203ENST00000409672 A6NJR5 290 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 HEXIM1O94992 359 aaKnown RBP9.24□□□□□ -0.93
SCN9A-203ENST00000409672 S100BP04271 92 aaPredicted RBP9.24□□□□□ -0.93
SCN9A-203ENST00000409672 EPHB1P54762 984 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.24□□□□□ -0.93
SCN9A-203ENST00000409672 SUCLG2Q96I99 432 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 SUFUQ9UMX1 484 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 GUCY2FP51841 1108 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 PAK1Q13153 545 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 IQCB1Q15051 598 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 RWDD4Q6NW29 188 aaKnown RBP9.24□□□□□ -0.93
SCN9A-203ENST00000409672 C14orf93Q9H972 538 aaKnown RBP9.24□□□□□ -0.93
SCN9A-203ENST00000409672 SLC52A2Q9HAB3 445 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 PCDHB15Q9Y5E8 787 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 TFAMQ00059 246 aaKnown RBP9.24□□□□□ -0.93
SCN9A-203ENST00000409672 ADCY1Q08828 1119 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 MTERF2Q49AM1 385 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 CEP85Q6P2H3 762 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 ALDH1L1O75891 902 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 NONOQ15233 471 aaKnown RBP eCLIP9.24□□□□□ -0.93
SCN9A-203ENST00000409672 DCAF4L1Q3SXM0 396 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 KRT27Q7Z3Y8 459 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 KLHL30Q0D2K2 578 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 CDO1Q16878 200 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 PNMA8AQ86V59 439 aaPredicted RBP9.24□□□□□ -0.93
SCN9A-203ENST00000409672 ZCWPW1Q9H0M4 648 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 SLC38A10Q9HBR0 1119 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 NCAPD3P42695 1498 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 THAP12O43422 761 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 LONRF2Q1L5Z9 754 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 MMEL1Q495T6 779 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 C2orf69Q8N8R5 385 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 SNX1Q13596 522 aa9.24□□□□□ -0.93
SCN9A-203ENST00000409672 EYA2O00167 538 aa9.23□□□□□ -0.93
SCN9A-203ENST00000409672 N4BP1O75113 896 aaKnown RBP9.23□□□□□ -0.93
SCN9A-203ENST00000409672 PNOCQ13519 176 aa9.23□□□□□ -0.93
SCN9A-203ENST00000409672 TTLL7Q6ZT98 887 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms