RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 PCDHA7Q9UN72 937 aa12.86□□□□□ -0.35
SNX13-202ENST00000409604 CASP1P29466 404 aa12.86□□□□□ -0.35
SNX13-202ENST00000409604 STX1AQ16623 288 aa12.86□□□□□ -0.35
SNX13-202ENST00000409604 HERC4Q5GLZ8 1057 aaPredicted RBP12.86□□□□□ -0.35
SNX13-202ENST00000409604 SYDE2Q5VT97 1194 aa12.86□□□□□ -0.35
SNX13-202ENST00000409604 KRT25Q7Z3Z0 450 aa12.86□□□□□ -0.35
SNX13-202ENST00000409604 ZNF668Q96K58 619 aaPredicted RBP12.86□□□□□ -0.35
SNX13-202ENST00000409604 LMBRD1Q9NUN5 540 aa12.86□□□□□ -0.35
SNX13-202ENST00000409604 PUF60Q9UHX1 559 aaKnown RBP12.86□□□□□ -0.35
SNX13-202ENST00000409604 SMTNL1A8MU46 457 aa12.86□□□□□ -0.35
SNX13-202ENST00000409604 PTGS1P23219 599 aa12.86□□□□□ -0.35
SNX13-202ENST00000409604 CA8P35219 290 aa12.86□□□□□ -0.35
SNX13-202ENST00000409604 PLA2G4DQ86XP0 818 aa12.86□□□□□ -0.35
SNX13-202ENST00000409604 GPBP1L1Q9HC44 474 aaPredicted RBP12.86□□□□□ -0.35
SNX13-202ENST00000409604 AK9Q5TCS8 1911 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 DDAH1O94760 285 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 CSPG5O95196 566 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 IFNAR1P17181 557 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 GPATCH4Q5T3I0 446 aaKnown RBP12.85□□□□□ -0.35
SNX13-202ENST00000409604 MOB2Q70IA6 237 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 DHX37Q8IY37 1157 aaKnown RBP12.85□□□□□ -0.35
SNX13-202ENST00000409604 VGLL2Q8N8G2 317 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 ZBTB9Q96C00 473 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 RASA1P20936 1047 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 LIFRP42702 1097 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 PDE4DQ08499 809 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 TDRD12Q587J7 1177 aaKnown RBP12.85□□□□□ -0.35
SNX13-202ENST00000409604 CEP135Q66GS9 1140 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 NEK8Q86SG6 692 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 SYT17Q9BSW7 474 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 MLXIPQ9HAP2 919 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 ZNHIT6Q9NWK9 470 aaKnown RBP12.85□□□□□ -0.35
SNX13-202ENST00000409604 NOD1Q9Y239 953 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 PLEKHG2Q9H7P9 1386 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 SSR1P43307 286 aaKnown RBP12.85□□□□□ -0.35
SNX13-202ENST00000409604 SRBD1Q8N5C6 995 aaKnown RBP12.85□□□□□ -0.35
SNX13-202ENST00000409604 METTL13Q8N6R0 699 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 C2orf69Q8N8R5 385 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 TSG101Q99816 390 aa12.85□□□□□ -0.35
SNX13-202ENST00000409604 RIOK1Q9BRS2 568 aaKnown RBP12.85□□□□□ -0.35
SNX13-202ENST00000409604 GLIS2Q9BZE0 524 aaPredicted RBP12.85□□□□□ -0.35
SNX13-202ENST00000409604 MYO3BQ8WXR4 1341 aa12.84□□□□□ -0.35
SNX13-202ENST00000409604 ADM5C9JUS6 153 aa12.84□□□□□ -0.35
SNX13-202ENST00000409604 FAM160A1Q05DH4 1040 aa12.84□□□□□ -0.35
SNX13-202ENST00000409604 ODF2Q5BJF6 829 aa12.84□□□□□ -0.35
SNX13-202ENST00000409604 NLRX1Q86UT6 975 aa12.84□□□□□ -0.35
SNX13-202ENST00000409604 DGKHQ86XP1 1220 aa12.84□□□□□ -0.35
SNX13-202ENST00000409604 SMYD4Q8IYR2 804 aaPredicted RBP12.84□□□□□ -0.35
SNX13-202ENST00000409604 MPHOSPH6Q99547 160 aaKnown RBP12.84□□□□□ -0.35
SNX13-202ENST00000409604 DDX25Q9UHL0 483 aaKnown RBP12.84□□□□□ -0.35
SNX13-202ENST00000409604 GPR75-ASB3A0A0A6YYF3 556 aa12.84□□□□□ -0.35
SNX13-202ENST00000409604 FMNL1O95466 1100 aaPredicted RBP12.84□□□□□ -0.35
SNX13-202ENST00000409604 PFKFB1P16118 471 aa12.84□□□□□ -0.35
SNX13-202ENST00000409604 NDUFA8P51970 172 aa12.84□□□□□ -0.35
SNX13-202ENST00000409604 KCTD2Q14681 263 aa12.84□□□□□ -0.35
SNX13-202ENST00000409604 SHROOM1Q2M3G4 852 aaPredicted RBP12.84□□□□□ -0.35
SNX13-202ENST00000409604 CABP7Q86V35 215 aa12.84□□□□□ -0.35
SNX13-202ENST00000409604 RRAGCQ9HB90 399 aa12.84□□□□□ -0.35
SNX13-202ENST00000409604 ZHX1Q9UKY1 873 aaPredicted RBP12.84□□□□□ -0.35
SNX13-202ENST00000409604 BMP15O95972 392 aa12.84□□□□□ -0.35
SNX13-202ENST00000409604 TGFB2P61812 414 aa12.84□□□□□ -0.35
SNX13-202ENST00000409604 KIF23Q02241 960 aaPredicted RBP12.84□□□□□ -0.35
SNX13-202ENST00000409604 EPSTI1Q96J88 318 aa12.84□□□□□ -0.35
SNX13-202ENST00000409604 LZTS2Q9BRK4 669 aa12.84□□□□□ -0.35
SNX13-202ENST00000409604 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.84□□□□□ -0.35
SNX13-202ENST00000409604 WNT10BO00744 389 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 CTAGE5O15320 804 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 NDUFB10O96000 172 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 PABPC4Q13310 644 aaKnown RBP eCLIP12.83□□□□□ -0.36
SNX13-202ENST00000409604 QRICH1Q2TAL8 776 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 SNRNP48Q6IEG0 339 aaKnown RBP12.83□□□□□ -0.36
SNX13-202ENST00000409604 UPF1Q92900 1129 aaKnown RBP eCLIP12.83□□□□□ -0.36
SNX13-202ENST00000409604 TTC14Q96N46 770 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 RNF26Q9BY78 433 aaPredicted RBP12.83□□□□□ -0.36
SNX13-202ENST00000409604 SLIT2O94813 1529 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 ASPRV1Q53RT3 343 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 DCAF17Q5H9S7 520 aaPredicted RBP12.83□□□□□ -0.36
SNX13-202ENST00000409604 TMTC3Q6ZXV5 915 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 SV2BQ7L1I2 683 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.83□□□□□ -0.36
SNX13-202ENST00000409604 CSRNP2Q9H175 543 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 MRPL11Q9Y3B7 192 aaKnown RBP12.83□□□□□ -0.36
SNX13-202ENST00000409604 NWD1Q149M9 1564 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 ARHGEF35A5YM69 484 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 CELF2O95319 508 aaKnown RBP12.83□□□□□ -0.36
SNX13-202ENST00000409604 MARK3P27448 753 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 HUNKP57058 714 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 LRSAM1Q6UWE0 723 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 ADGRF4Q8IZF3 695 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 MTMR4Q9NYA4 1195 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 LRP6O75581 1613 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 KNDC1Q76NI1 1749 aa12.83□□□□□ -0.36
SNX13-202ENST00000409604 NEDD1Q8NHV4 660 aa12.82□□□□□ -0.36
SNX13-202ENST00000409604 RTFDC1Q9BY42 306 aaPredicted RBP12.82□□□□□ -0.36
SNX13-202ENST00000409604 VPS16Q9H269 839 aa12.82□□□□□ -0.36
SNX13-202ENST00000409604 TRAF5O00463 557 aa12.82□□□□□ -0.36
SNX13-202ENST00000409604 UBASH3AP57075 661 aa12.82□□□□□ -0.36
SNX13-202ENST00000409604 IGDCC4Q8TDY8 1250 aa12.82□□□□□ -0.36
SNX13-202ENST00000409604 TTC12Q9H892 705 aaPredicted RBP12.82□□□□□ -0.36
SNX13-202ENST00000409604 RGS17Q9UGC6 210 aaPredicted RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms