RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ARHGAP6O43182 974 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 DDAH1O94760 285 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 TPM1P09493 284 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 SLC35G1Q2M3R5 365 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 SPATA1Q5VX52 437 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 RPN1P04843 607 aaKnown RBP15.11■□□□□ 0.01
VPS54-203ENST00000409558 TM4SF1P30408 202 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 KRT9P35527 623 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 KLK7P49862 253 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 KCTD1Q719H9 257 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 GDAP1L1Q96MZ0 367 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 SLC39A2Q9NP94 309 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 SHANK3Q9BYB0 1731 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 PAK1Q13153 545 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 DPP8Q6V1X1 898 aaPredicted RBP15.11■□□□□ 0.01
VPS54-203ENST00000409558 ANAPC4Q9UJX5 808 aa15.11■□□□□ 0.01
VPS54-203ENST00000409558 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.11■□□□□ 0.01
VPS54-203ENST00000409558 MRPS25P82663 173 aaKnown RBP15.1■□□□□ 0.01
VPS54-203ENST00000409558 LRRC41Q15345 812 aa15.1■□□□□ 0.01
VPS54-203ENST00000409558 WDR66Q8TBY9 1149 aa15.1■□□□□ 0.01
VPS54-203ENST00000409558 PSMB7Q99436 277 aa15.1■□□□□ 0.01
VPS54-203ENST00000409558 PARP1P09874 1014 aaKnown RBP15.1■□□□□ 0.01
VPS54-203ENST00000409558 FCER1AP12319 257 aa15.1■□□□□ 0.01
VPS54-203ENST00000409558 GRAPQ13588 217 aa15.1■□□□□ 0.01
VPS54-203ENST00000409558 KCTD19Q17RG1 926 aaPredicted RBP15.1■□□□□ 0.01
VPS54-203ENST00000409558 GRAPLQ8TC17 118 aaPredicted RBP15.1■□□□□ 0.01
VPS54-203ENST00000409558 FERMT2Q96AC1 680 aa15.1■□□□□ 0.01
VPS54-203ENST00000409558 CAPZA3Q96KX2 299 aa15.1■□□□□ 0.01
VPS54-203ENST00000409558 DBNDD1Q9H9R9 158 aa15.1■□□□□ 0.01
VPS54-203ENST00000409558 KCNQ5Q9NR82 932 aa15.1■□□□□ 0.01
VPS54-203ENST00000409558 PPP1R3GB7ZBB8 358 aa15.1■□□□□ 0.01
VPS54-203ENST00000409558 ATP2C1P98194 919 aaPredicted RBP15.1■□□□□ 0.01
VPS54-203ENST00000409558 TTBK2Q6IQ55 1244 aa15.1■□□□□ 0.01
VPS54-203ENST00000409558 KIAA0825Q8IV33 1275 aa15.1■□□□□ 0.01
VPS54-203ENST00000409558 ANKRD20A12PQ8NF67 263 aa15.1■□□□□ 0.01
VPS54-203ENST00000409558 PKNOX2Q96KN3 472 aa15.1■□□□□ 0.01
VPS54-203ENST00000409558 CHP1Q99653 195 aa15.1■□□□□ 0.01
VPS54-203ENST00000409558 PLEKHA4Q9H4M7 779 aa15.1■□□□□ 0.01
VPS54-203ENST00000409558 STRCQ7RTU9 1775 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 KCNJ18B7U540 433 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 KCNJ12Q14500 433 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 TXNRD1Q16881 649 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 ZNF397Q8NF99 534 aaPredicted RBP15.09■□□□□ 0.01
VPS54-203ENST00000409558 POLLQ9UGP5 575 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 SCAF8Q9UPN6 1271 aaKnown RBP15.09■□□□□ 0.01
VPS54-203ENST00000409558 MYH13Q9UKX3 1938 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 RASA1P20936 1047 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 SARSP49591 514 aaKnown RBP15.09■□□□□ 0.01
VPS54-203ENST00000409558 GYS2P54840 703 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 PDE4DQ08499 809 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 MAD2L2Q9UI95 211 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 PCDHA4Q9UN74 947 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 POTEMA6NI47 508 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 NKRFO15226 690 aaKnown RBP eCLIP15.09■□□□□ 0.01
VPS54-203ENST00000409558 CLCN6P51797 869 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 TRIM65Q6PJ69 517 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 TBCKQ8TEA7 893 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 CDK5RAP3Q96JB5 506 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 TANGO6Q9C0B7 1094 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 ZCCHC17Q9NP64 241 aaKnown RBP15.09■□□□□ 0.01
VPS54-203ENST00000409558 PCDHA6Q9UN73 950 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 PCDHA8Q9Y5H6 950 aa15.09■□□□□ 0.01
VPS54-203ENST00000409558 DOT1LQ8TEK3 1739 aa15.08■□□□□ 0.01
VPS54-203ENST00000409558 TTF2Q9UNY4 1162 aaKnown RBP15.08■□□□□ 0.01
VPS54-203ENST00000409558 PSDA5PKW4 1024 aaPredicted RBP15.08■□□□□ 0
VPS54-203ENST00000409558 B4DLN1 442 aa15.08■□□□□ 0
VPS54-203ENST00000409558 CCDC175P0C221 793 aa15.08■□□□□ 0
VPS54-203ENST00000409558 PLCG1P19174 1290 aa15.08■□□□□ 0
VPS54-203ENST00000409558 PPP2R3AQ06190 1150 aa15.08■□□□□ 0
VPS54-203ENST00000409558 SEPT12Q8IYM1 358 aa15.08■□□□□ 0
VPS54-203ENST00000409558 TCP11L1Q9NUJ3 509 aa15.08■□□□□ 0
VPS54-203ENST00000409558 ZNF18P17022 549 aa15.08■□□□□ 0
VPS54-203ENST00000409558 MTIF2P46199 727 aaKnown RBP15.08■□□□□ 0
VPS54-203ENST00000409558 POTEDQ86YR6 584 aa15.08■□□□□ 0
VPS54-203ENST00000409558 NR1I3Q14994 352 aa15.08■□□□□ 0
VPS54-203ENST00000409558 MAGEC2Q9UBF1 373 aaPredicted RBP15.08■□□□□ 0
VPS54-203ENST00000409558 MYH7P12883 1935 aa15.08■□□□□ 0
VPS54-203ENST00000409558 PPARDQ03181 441 aa15.07■□□□□ 0
VPS54-203ENST00000409558 TRIM21P19474 475 aaKnown RBP15.07■□□□□ 0
VPS54-203ENST00000409558 CALML3P27482 149 aa15.07■□□□□ 0
VPS54-203ENST00000409558 ST5P78524 1137 aa15.07■□□□□ 0
VPS54-203ENST00000409558 SLC30A10Q6XR72 485 aa15.07■□□□□ 0
VPS54-203ENST00000409558 BARGINQ6ZT62 677 aa15.07■□□□□ 0
VPS54-203ENST00000409558 CABP7Q86V35 215 aa15.07■□□□□ 0
VPS54-203ENST00000409558 ABCC6O95255 1503 aa15.07■□□□□ 0
VPS54-203ENST00000409558 ORC4O43929 436 aa15.07■□□□□ 0
VPS54-203ENST00000409558 TDP2O95551 362 aa15.07■□□□□ 0
VPS54-203ENST00000409558 CYP27A1Q02318 531 aa15.07■□□□□ 0
VPS54-203ENST00000409558 MCM6Q14566 821 aa15.07■□□□□ 0
VPS54-203ENST00000409558 TMEM139Q8IV31 216 aa15.07■□□□□ 0
VPS54-203ENST00000409558 ZNF579Q8NAF0 562 aaKnown RBP15.07■□□□□ 0
VPS54-203ENST00000409558 ROBO1Q9Y6N7 1651 aa15.07■□□□□ 0
VPS54-203ENST00000409558 GYPCP04921 128 aa15.06■□□□□ 0
VPS54-203ENST00000409558 LDHCP07864 332 aa15.06■□□□□ 0
VPS54-203ENST00000409558 AKR1B1P15121 316 aa15.06■□□□□ 0
VPS54-203ENST00000409558 COPB1P53618 953 aaKnown RBP15.06■□□□□ 0
VPS54-203ENST00000409558 TSR1Q2NL82 804 aaKnown RBP15.06■□□□□ 0
VPS54-203ENST00000409558 TMCO3Q6UWJ1 677 aa15.06■□□□□ 0
VPS54-203ENST00000409558 SLC35F6Q8N357 371 aa15.06■□□□□ 0
VPS54-203ENST00000409558 CSGALNACT2Q8N6G5 542 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms