RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 USP17L24Q0WX57 530 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 PABPC4Q13310 644 aaKnown RBP eCLIP23.79■■□□□ 1.4
VSX1-203ENST00000409285 CCL15Q16663 113 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 TREML2Q5T2D2 321 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 GPAT2Q6NUI2 795 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 GADL1Q6ZQY3 521 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 CATSPERGQ6ZRH7 1159 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 CCDC83Q8IWF9 413 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 SRBD1Q8N5C6 995 aaKnown RBP23.79■■□□□ 1.4
VSX1-203ENST00000409285 BRI3BPQ8WY22 251 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 CAPNS2Q96L46 248 aa23.79■■□□□ 1.4
VSX1-203ENST00000409285 ZCCHC17Q9NP64 241 aaKnown RBP23.79■■□□□ 1.4
VSX1-203ENST00000409285 WDR33Q9C0J8 1336 aaKnown RBP23.78■■□□□ 1.4
VSX1-203ENST00000409285 STK36Q9NRP7 1315 aa23.78■■□□□ 1.4
VSX1-203ENST00000409285 TMEM232C9JQI7 657 aa23.78■■□□□ 1.4
VSX1-203ENST00000409285 NOGQ13253 232 aa23.78■■□□□ 1.4
VSX1-203ENST00000409285 ANKRD23Q86SG2 305 aa23.78■■□□□ 1.4
VSX1-203ENST00000409285 TANGO6Q9C0B7 1094 aa23.78■■□□□ 1.4
VSX1-203ENST00000409285 GPCPD1Q9NPB8 672 aa23.78■■□□□ 1.4
VSX1-203ENST00000409285 SMCHD1A6NHR9 2005 aa23.78■■□□□ 1.4
VSX1-203ENST00000409285 CYTH3O43739 400 aa23.77■■□□□ 1.4
VSX1-203ENST00000409285 CTDNEP1O95476 244 aa23.77■■□□□ 1.4
VSX1-203ENST00000409285 MKRN3Q13064 507 aaKnown RBP23.77■■□□□ 1.4
VSX1-203ENST00000409285 GRM1Q13255 1194 aa23.77■■□□□ 1.4
VSX1-203ENST00000409285 SLC35G1Q2M3R5 365 aa23.77■■□□□ 1.4
VSX1-203ENST00000409285 TTBK2Q6IQ55 1244 aa23.77■■□□□ 1.4
VSX1-203ENST00000409285 NBPF11Q86T75 865 aa23.77■■□□□ 1.4
VSX1-203ENST00000409285 PRPF38AQ8NAV1 312 aaKnown RBP23.77■■□□□ 1.4
VSX1-203ENST00000409285 NSUN7Q8NE18 718 aaKnown RBP23.77■■□□□ 1.4
VSX1-203ENST00000409285 MTMR8Q96EF0 704 aa23.77■■□□□ 1.4
VSX1-203ENST00000409285 RNF26Q9BY78 433 aaPredicted RBP23.77■■□□□ 1.4
VSX1-203ENST00000409285 REM2Q8IYK8 340 aaPredicted RBP23.76■■□□□ 1.39
VSX1-203ENST00000409285 SMARCC2Q8TAQ2 1214 aa23.76■■□□□ 1.39
VSX1-203ENST00000409285 SLF1Q9BQI6 1058 aa23.76■■□□□ 1.39
VSX1-203ENST00000409285 RBM27Q9P2N5 1060 aaKnown RBP23.76■■□□□ 1.39
VSX1-203ENST00000409285 PPP1R9AQ9ULJ8 1098 aa23.76■■□□□ 1.39
VSX1-203ENST00000409285 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.76■■□□□ 1.39
VSX1-203ENST00000409285 FLOT1O75955 427 aa23.75■■□□□ 1.39
VSX1-203ENST00000409285 FDX1P10109 184 aa23.75■■□□□ 1.39
VSX1-203ENST00000409285 SREBF2Q12772 1141 aa23.75■■□□□ 1.39
VSX1-203ENST00000409285 SYDE2Q5VT97 1194 aa23.75■■□□□ 1.39
VSX1-203ENST00000409285 LBX2Q6XYB7 198 aa23.75■■□□□ 1.39
VSX1-203ENST00000409285 PRR12Q9ULL5 1215 aa23.75■■□□□ 1.39
VSX1-203ENST00000409285 ADAMTS5Q9UNA0 930 aa23.75■■□□□ 1.39
VSX1-203ENST00000409285 COG2Q14746 738 aa23.75■■□□□ 1.39
VSX1-203ENST00000409285 ADGRF4Q8IZF3 695 aa23.75■■□□□ 1.39
VSX1-203ENST00000409285 PTPN18Q99952 460 aa23.75■■□□□ 1.39
VSX1-203ENST00000409285 FBXO28Q9NVF7 368 aa23.75■■□□□ 1.39
VSX1-203ENST00000409285 PNMA3Q9UL41 463 aa23.75■■□□□ 1.39
VSX1-203ENST00000409285 ISY1Q9ULR0 285 aaKnown RBP23.75■■□□□ 1.39
VSX1-203ENST00000409285 BTBD19C9JJ37 291 aa23.74■■□□□ 1.39
VSX1-203ENST00000409285 FMNL1O95466 1100 aaPredicted RBP23.74■■□□□ 1.39
VSX1-203ENST00000409285 SLC16A2P36021 539 aa23.74■■□□□ 1.39
VSX1-203ENST00000409285 TM4SF4P48230 202 aa23.74■■□□□ 1.39
VSX1-203ENST00000409285 HMGN5P82970 282 aaKnown RBP23.74■■□□□ 1.39
VSX1-203ENST00000409285 IKQ13123 557 aaPredicted RBP23.74■■□□□ 1.39
VSX1-203ENST00000409285 TRIM22Q8IYM9 498 aa23.74■■□□□ 1.39
VSX1-203ENST00000409285 CMTR1Q8N1G2 835 aaKnown RBP23.74■■□□□ 1.39
VSX1-203ENST00000409285 UBA5Q9GZZ9 404 aa23.74■■□□□ 1.39
VSX1-203ENST00000409285 CPVLQ9H3G5 476 aa23.74■■□□□ 1.39
VSX1-203ENST00000409285 JMJD4Q9H9V9 463 aa23.74■■□□□ 1.39
VSX1-203ENST00000409285 HOXC10Q9NYD6 342 aa23.74■■□□□ 1.39
VSX1-203ENST00000409285 PTPDC1A2A3K4 754 aa23.73■■□□□ 1.39
VSX1-203ENST00000409285 PRPF3O43395 683 aaKnown RBP23.73■■□□□ 1.39
VSX1-203ENST00000409285 DSG3P32926 999 aa23.73■■□□□ 1.39
VSX1-203ENST00000409285 JMYQ8N9B5 988 aa23.73■■□□□ 1.39
VSX1-203ENST00000409285 ASCC2Q9H1I8 757 aaPredicted RBP23.73■■□□□ 1.39
VSX1-203ENST00000409285 RANBP17Q9H2T7 1088 aaKnown RBP23.73■■□□□ 1.39
VSX1-203ENST00000409285 SPDYE16A6NNV3 312 aaPredicted RBP23.72■■□□□ 1.39
VSX1-203ENST00000409285 OSBPP22059 807 aa23.72■■□□□ 1.39
VSX1-203ENST00000409285 IRX3P78415 501 aaPredicted RBP23.72■■□□□ 1.39
VSX1-203ENST00000409285 FAM43AQ8N2R8 423 aa23.72■■□□□ 1.39
VSX1-203ENST00000409285 PHKBQ93100 1093 aa23.72■■□□□ 1.39
VSX1-203ENST00000409285 PDHXO00330 501 aa23.71■■□□□ 1.39
VSX1-203ENST00000409285 ZBTB5O15062 677 aa23.71■■□□□ 1.39
VSX1-203ENST00000409285 SSRP1Q08945 709 aaKnown RBP23.71■■□□□ 1.39
VSX1-203ENST00000409285 CCDC82Q8N4S0 544 aa23.71■■□□□ 1.39
VSX1-203ENST00000409285 GTF3C2Q8WUA4 911 aaPredicted RBP23.71■■□□□ 1.39
VSX1-203ENST00000409285 KIFC2Q96AC6 838 aa23.71■■□□□ 1.39
VSX1-203ENST00000409285 RRP36Q96EU6 259 aaKnown RBP23.71■■□□□ 1.39
VSX1-203ENST00000409285 SLC38A10Q9HBR0 1119 aa23.71■■□□□ 1.39
VSX1-203ENST00000409285 IGF2BP3O00425 579 aaKnown RBP eCLIP23.7■■□□□ 1.38
VSX1-203ENST00000409285 VWA5AO00534 786 aa23.7■■□□□ 1.38
VSX1-203ENST00000409285 JAK2O60674 1132 aa23.7■■□□□ 1.38
VSX1-203ENST00000409285 AOC2O75106 756 aa23.7■■□□□ 1.38
VSX1-203ENST00000409285 DEXIO95424 95 aa23.7■■□□□ 1.38
VSX1-203ENST00000409285 MAP2K2P36507 400 aa23.7■■□□□ 1.38
VSX1-203ENST00000409285 IFNL1Q8IU54 200 aa23.7■■□□□ 1.38
VSX1-203ENST00000409285 MB21D1Q8N884 522 aa23.7■■□□□ 1.38
VSX1-203ENST00000409285 SLC26A6Q9BXS9 759 aa23.7■■□□□ 1.38
VSX1-203ENST00000409285 SEC63Q9UGP8 760 aaKnown RBP23.7■■□□□ 1.38
VSX1-203ENST00000409285 PNMA6FA0A0J9YX94 578 aa23.69■■□□□ 1.38
VSX1-203ENST00000409285 FDPSP14324 419 aaKnown RBP23.69■■□□□ 1.38
VSX1-203ENST00000409285 OAZ1P54368 228 aa23.69■■□□□ 1.38
VSX1-203ENST00000409285 HERVK_113P62684 666 aa23.69■■□□□ 1.38
VSX1-203ENST00000409285 KIF23Q02241 960 aaPredicted RBP23.69■■□□□ 1.38
VSX1-203ENST00000409285 CDC37Q16543 378 aaPredicted RBP23.69■■□□□ 1.38
VSX1-203ENST00000409285 OTUD7BQ6GQQ9 843 aa23.69■■□□□ 1.38
VSX1-203ENST00000409285 PIGSQ96S52 555 aa23.69■■□□□ 1.38
VSX1-203ENST00000409285 PNMA2Q9UL42 364 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms