RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 CDK11BP21127 795 aaKnown RBP11.15□□□□□ -0.62
MSH2-202ENST00000406134 HIBADHP31937 336 aaKnown RBP11.15□□□□□ -0.62
MSH2-202ENST00000406134 ZNF658Q5TYW1 1059 aaPredicted RBP11.15□□□□□ -0.62
MSH2-202ENST00000406134 USP17L1Q7RTZ2 530 aa11.15□□□□□ -0.62
MSH2-202ENST00000406134 SLC44A5Q8NCS7 719 aa11.15□□□□□ -0.62
MSH2-202ENST00000406134 BMP15O95972 392 aa11.15□□□□□ -0.62
MSH2-202ENST00000406134 CASQ1P31415 396 aa11.15□□□□□ -0.62
MSH2-202ENST00000406134 DAGLBQ8NCG7 672 aa11.15□□□□□ -0.62
MSH2-202ENST00000406134 AMPD2Q01433 879 aa11.15□□□□□ -0.63
MSH2-202ENST00000406134 ARL6IP4Q66PJ3 421 aaKnown RBP11.15□□□□□ -0.63
MSH2-202ENST00000406134 WDR59Q6PJI9 974 aa11.15□□□□□ -0.63
MSH2-202ENST00000406134 BLIDQ8IZY5 108 aa11.15□□□□□ -0.63
MSH2-202ENST00000406134 ADSSL1Q8N142 457 aa11.15□□□□□ -0.63
MSH2-202ENST00000406134 TTYH3Q9C0H2 523 aa11.15□□□□□ -0.63
MSH2-202ENST00000406134 DISC1Q9NRI5 854 aa11.15□□□□□ -0.63
MSH2-202ENST00000406134 PCDHA4Q9UN74 947 aa11.15□□□□□ -0.63
MSH2-202ENST00000406134 KIF13BQ9NQT8 1826 aa11.15□□□□□ -0.63
MSH2-202ENST00000406134 RPN1P04843 607 aaKnown RBP11.14□□□□□ -0.63
MSH2-202ENST00000406134 XBP1P17861 261 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 COPB1P53618 953 aaKnown RBP11.14□□□□□ -0.63
MSH2-202ENST00000406134 NAA15Q9BXJ9 866 aaKnown RBP11.14□□□□□ -0.63
MSH2-202ENST00000406134 FUT8Q9BYC5 575 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 PARD6BQ9BYG5 372 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 DNAJC5Q9H3Z4 198 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 LZTFL1Q9NQ48 299 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 SH3GLB2Q9NR46 395 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 PALM3A6NDB9 673 aaPredicted RBP11.14□□□□□ -0.63
MSH2-202ENST00000406134 GOLGA6L9A6NEM1 432 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 AKAP17AQ02040 695 aaKnown RBP11.14□□□□□ -0.63
MSH2-202ENST00000406134 NFIXQ14938 502 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 CPLX3Q8WVH0 158 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 NELFBQ8WX92 580 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 SMARCC1Q92922 1105 aaPredicted RBP11.14□□□□□ -0.63
MSH2-202ENST00000406134 PNKPQ96T60 521 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 CRNKL1Q9BZJ0 848 aaKnown RBP11.14□□□□□ -0.63
MSH2-202ENST00000406134 KBTBD4Q9NVX7 518 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 A0A0G2JS52 829 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 NOVP48745 357 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 IQUBQ8NA54 791 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 GPR101Q96P66 508 aaPredicted RBP11.14□□□□□ -0.63
MSH2-202ENST00000406134 CHP1Q99653 195 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 DUSP9Q99956 384 aaKnown RBP11.14□□□□□ -0.63
MSH2-202ENST00000406134 RTFDC1Q9BY42 306 aaPredicted RBP11.14□□□□□ -0.63
MSH2-202ENST00000406134 TCP11L1Q9NUJ3 509 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 TAB2Q9NYJ8 693 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 TRIM10Q9UDY6 481 aa11.14□□□□□ -0.63
MSH2-202ENST00000406134 RBBP6Q7Z6E9 1792 aaKnown RBP11.13□□□□□ -0.63
MSH2-202ENST00000406134 CCDC175P0C221 793 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 LONP1P36776 959 aaKnown RBP11.13□□□□□ -0.63
MSH2-202ENST00000406134 NLRP5P59047 1200 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 TFAP4Q01664 338 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 DIXDC1Q155Q3 683 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 DGKHQ86XP1 1220 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 PNMA1Q8ND90 353 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 CTCFLQ8NI51 663 aaPredicted RBP11.13□□□□□ -0.63
MSH2-202ENST00000406134 UBXN4Q92575 508 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 KCNJ18B7U540 433 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 NRDCO43847 1150 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 RASA1P20936 1047 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 PAK1Q13153 545 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 KCNJ12Q14500 433 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 GPR161Q8N6U8 529 aaKnown RBP11.13□□□□□ -0.63
MSH2-202ENST00000406134 MMTAG2Q9BU76 263 aaKnown RBP11.13□□□□□ -0.63
MSH2-202ENST00000406134 VPS16Q9H269 839 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 CPVLQ9H3G5 476 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 MAPK8IP1Q9UQF2 711 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 BMS1Q14692 1282 aaKnown RBP11.13□□□□□ -0.63
MSH2-202ENST00000406134 RC3H1Q5TC82 1133 aaKnown RBP11.13□□□□□ -0.63
MSH2-202ENST00000406134 RRAGBQ5VZM2 374 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 TTI2Q6NXR4 508 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 MCM9Q9NXL9 1143 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 TFR2Q9UP52 801 aa11.13□□□□□ -0.63
MSH2-202ENST00000406134 MAP2K7O14733 419 aa11.12□□□□□ -0.63
MSH2-202ENST00000406134 RABGGTAQ92696 567 aa11.12□□□□□ -0.63
MSH2-202ENST00000406134 CTAGE1Q96RT6 745 aa11.12□□□□□ -0.63
MSH2-202ENST00000406134 BARHL2Q9NY43 387 aa11.12□□□□□ -0.63
MSH2-202ENST00000406134 COL11A2P13942 1736 aaPredicted RBP11.12□□□□□ -0.63
MSH2-202ENST00000406134 TSPY2A6NKD2 308 aa11.12□□□□□ -0.63
MSH2-202ENST00000406134 RPS6KA4O75676 772 aa11.12□□□□□ -0.63
MSH2-202ENST00000406134 HERVK_113P62684 666 aa11.12□□□□□ -0.63
MSH2-202ENST00000406134 FAM98CQ17RN3 349 aaKnown RBP11.12□□□□□ -0.63
MSH2-202ENST00000406134 SLC35F6Q8N357 371 aa11.12□□□□□ -0.63
MSH2-202ENST00000406134 CCDC12Q8WUD4 166 aaPredicted RBP11.12□□□□□ -0.63
MSH2-202ENST00000406134 RAB21Q9UL25 225 aa11.12□□□□□ -0.63
MSH2-202ENST00000406134 H3BQF6 201 aa11.11□□□□□ -0.63
MSH2-202ENST00000406134 MSANTD4Q8NCY6 345 aa11.11□□□□□ -0.63
MSH2-202ENST00000406134 GIMAP8Q8ND71 665 aaPredicted RBP11.11□□□□□ -0.63
MSH2-202ENST00000406134 DNAJC7Q99615 494 aa11.11□□□□□ -0.63
MSH2-202ENST00000406134 TMEM47Q9BQJ4 181 aa11.11□□□□□ -0.63
MSH2-202ENST00000406134 MYH10P35580 1976 aa11.11□□□□□ -0.63
MSH2-202ENST00000406134 TTC26A0AVF1 554 aa11.11□□□□□ -0.63
MSH2-202ENST00000406134 RHOBTB3O94955 611 aa11.11□□□□□ -0.63
MSH2-202ENST00000406134 CYP2C19P33261 490 aa11.11□□□□□ -0.63
MSH2-202ENST00000406134 KLK7P49862 253 aa11.11□□□□□ -0.63
MSH2-202ENST00000406134 PPP4CP60510 307 aa11.11□□□□□ -0.63
MSH2-202ENST00000406134 KCNB1Q14721 858 aa11.11□□□□□ -0.63
MSH2-202ENST00000406134 INF2Q27J81 1249 aa11.11□□□□□ -0.63
MSH2-202ENST00000406134 ARHGEF1Q92888 912 aaKnown RBP11.11□□□□□ -0.63
MSH2-202ENST00000406134 BRMS1Q9HCU9 246 aa11.11□□□□□ -0.63
MSH2-202ENST00000406134 RCCD1A6NED2 376 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms