RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 NAPBQ9H115 298 aa10.91□□□□□ -0.66
VPS53-203ENST00000401468 UNC93B1Q9H1C4 597 aa10.91□□□□□ -0.66
VPS53-203ENST00000401468 ASCC2Q9H1I8 757 aaPredicted RBP10.91□□□□□ -0.66
VPS53-203ENST00000401468 ZCCHC17Q9NP64 241 aaKnown RBP10.91□□□□□ -0.66
VPS53-203ENST00000401468 MCM9Q9NXL9 1143 aa10.91□□□□□ -0.66
VPS53-203ENST00000401468 HERC5Q9UII4 1024 aaKnown RBP10.91□□□□□ -0.66
VPS53-203ENST00000401468 ZBTB21Q9ULJ3 1066 aa10.91□□□□□ -0.66
VPS53-203ENST00000401468 A0A0G2JMZ2 1700 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 TNPO2O14787 897 aaKnown RBP10.9□□□□□ -0.66
VPS53-203ENST00000401468 GRK4P32298 578 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 TDO2P48775 406 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 FLT3LGP49771 235 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 NT5C2P49902 561 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 FCGRTP55899 365 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 RAB3GAP1Q15042 981 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 TSGA10IPQ3SY00 556 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 TATDN1Q6P1N9 297 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 C16orf86Q6ZW13 317 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 FOXP4Q8IVH2 680 aaPredicted RBP10.9□□□□□ -0.66
VPS53-203ENST00000401468 ACER1Q8TDN7 264 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 DYNLL2Q96FJ2 89 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 DDRGK1Q96HY6 314 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 PAGR1Q9BTK6 254 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 USP26Q9BXU7 913 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 TXNRD2Q9NNW7 524 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 CTNNA3Q9UI47 895 aa10.9□□□□□ -0.66
VPS53-203ENST00000401468 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.9□□□□□ -0.66
VPS53-203ENST00000401468 ADCY3O60266 1144 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 APPP05067 770 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 HLA-DOAP06340 250 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 PCP11498 1178 aaKnown RBP10.89□□□□□ -0.67
VPS53-203ENST00000401468 CCL5P13501 91 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 SHMT1P34896 483 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 HSPA4P34932 840 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 PPARAQ07869 468 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 KIAA1211Q6ZU35 1233 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 NBPF11Q86T75 865 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 TTC13Q8NBP0 860 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 STAG1Q8WVM7 1258 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 P2RX7Q99572 595 aaKnown RBP10.89□□□□□ -0.67
VPS53-203ENST00000401468 BACH2Q9BYV9 841 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 RNF208Q9H0X6 261 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 ANO2Q9NQ90 1003 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 SWAP70Q9UH65 585 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 SERPINB13Q9UIV8 391 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 RBM8AQ9Y5S9 174 aaKnown RBP10.89□□□□□ -0.67
VPS53-203ENST00000401468 TACC3Q9Y6A5 838 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 PLIN4Q96Q06 1357 aa10.89□□□□□ -0.67
VPS53-203ENST00000401468 MPHOSPH10O00566 681 aaKnown RBP10.88□□□□□ -0.67
VPS53-203ENST00000401468 ORC4O43929 436 aa10.88□□□□□ -0.67
VPS53-203ENST00000401468 INHAP05111 366 aa10.88□□□□□ -0.67
VPS53-203ENST00000401468 POLR3DP05423 398 aaPredicted RBP10.88□□□□□ -0.67
VPS53-203ENST00000401468 CYP21A2P08686 494 aa10.88□□□□□ -0.67
VPS53-203ENST00000401468 ARHGEF6Q15052 776 aa10.88□□□□□ -0.67
VPS53-203ENST00000401468 FEZ1Q99689 392 aa10.88□□□□□ -0.67
VPS53-203ENST00000401468 MYH6P13533 1939 aa10.88□□□□□ -0.67
VPS53-203ENST00000401468 SLC27A2O14975 620 aa10.87□□□□□ -0.67
VPS53-203ENST00000401468 GUCY1A2P33402 732 aa10.87□□□□□ -0.67
VPS53-203ENST00000401468 BACE1P56817 501 aa10.87□□□□□ -0.67
VPS53-203ENST00000401468 IRX3P78415 501 aaPredicted RBP10.87□□□□□ -0.67
VPS53-203ENST00000401468 SEPT2Q15019 361 aa10.87□□□□□ -0.67
VPS53-203ENST00000401468 IMMTQ16891 758 aaKnown RBP10.87□□□□□ -0.67
VPS53-203ENST00000401468 Q3C1V9 767 aa10.87□□□□□ -0.67
VPS53-203ENST00000401468 AMOTL1Q8IY63 956 aa10.87□□□□□ -0.67
VPS53-203ENST00000401468 PROCA1Q8NCQ7 364 aaPredicted RBP10.87□□□□□ -0.67
VPS53-203ENST00000401468 AS3MTQ9HBK9 375 aa10.87□□□□□ -0.67
VPS53-203ENST00000401468 GINM1Q9NU53 330 aa10.87□□□□□ -0.67
VPS53-203ENST00000401468 TMOD4Q9NZQ9 345 aa10.87□□□□□ -0.67
VPS53-203ENST00000401468 RANBP2P49792 3224 aaKnown RBP10.87□□□□□ -0.67
VPS53-203ENST00000401468 UNC80Q8N2C7 3258 aa10.86□□□□□ -0.67
VPS53-203ENST00000401468 USP17L10C9JJH3 530 aa10.86□□□□□ -0.67
VPS53-203ENST00000401468 ZNF213O14771 459 aa10.86□□□□□ -0.67
VPS53-203ENST00000401468 ASNSP08243 561 aa10.86□□□□□ -0.67
VPS53-203ENST00000401468 CYP2B6P20813 491 aa10.86□□□□□ -0.67
VPS53-203ENST00000401468 NOVP48745 357 aa10.86□□□□□ -0.67
VPS53-203ENST00000401468 CDK8P49336 464 aa10.86□□□□□ -0.67
VPS53-203ENST00000401468 ABCB5Q2M3G0 1257 aa10.86□□□□□ -0.67
VPS53-203ENST00000401468 CERKLQ49MI3 558 aaPredicted RBP10.86□□□□□ -0.67
VPS53-203ENST00000401468 KIAA1755Q5JYT7 1200 aa10.86□□□□□ -0.67
VPS53-203ENST00000401468 AKNAD1Q5T1N1 836 aa10.86□□□□□ -0.67
VPS53-203ENST00000401468 WDR78Q5VTH9 848 aa10.86□□□□□ -0.67
VPS53-203ENST00000401468 CREB3L3Q68CJ9 461 aa10.86□□□□□ -0.67
VPS53-203ENST00000401468 TBC1D10CQ8IV04 446 aa10.86□□□□□ -0.67
VPS53-203ENST00000401468 DIS3LQ8TF46 1054 aaKnown RBP10.86□□□□□ -0.67
VPS53-203ENST00000401468 CHMP4CQ96CF2 233 aa10.86□□□□□ -0.67
VPS53-203ENST00000401468 IRX2Q9BZI1 471 aaPredicted RBP10.86□□□□□ -0.67
VPS53-203ENST00000401468 PORCNQ9H237 461 aa10.86□□□□□ -0.67
VPS53-203ENST00000401468 TAF6LQ9Y6J9 622 aa10.86□□□□□ -0.67
VPS53-203ENST00000401468 MINDY4BA8MYZ0 360 aa10.85□□□□□ -0.67
VPS53-203ENST00000401468 SLC3A2P08195 630 aaKnown RBP10.85□□□□□ -0.67
VPS53-203ENST00000401468 AKR1B1P15121 316 aa10.85□□□□□ -0.67
VPS53-203ENST00000401468 RASA1P20936 1047 aa10.85□□□□□ -0.67
VPS53-203ENST00000401468 HOXD10P28358 340 aa10.85□□□□□ -0.67
VPS53-203ENST00000401468 RBM25P49756 843 aaKnown RBP10.85□□□□□ -0.67
VPS53-203ENST00000401468 ANAPC15P60006 121 aa10.85□□□□□ -0.67
VPS53-203ENST00000401468 HERVK_113P62684 666 aa10.85□□□□□ -0.67
VPS53-203ENST00000401468 CTDSPL2Q05D32 466 aa10.85□□□□□ -0.67
VPS53-203ENST00000401468 CCL14Q16627 93 aa10.85□□□□□ -0.67
VPS53-203ENST00000401468 FAM110CQ1W6H9 321 aa10.85□□□□□ -0.67
VPS53-203ENST00000401468 SWT1Q5T5J6 900 aaKnown RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms