RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 CCDC196A0A1B0GTZ2 297 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 PRPF3O43395 683 aaKnown RBP13.48□□□□□ -0.25
SKA3-203ENST00000400018 CDKL5O76039 1030 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 PTPRAP18433 802 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 KIF5BP33176 963 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 JAKMIP3Q5VZ66 844 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 SLC30A10Q6XR72 485 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 PIK3AP1Q6ZUJ8 805 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 ERCC4Q92889 916 aaPredicted RBP13.48□□□□□ -0.25
SKA3-203ENST00000400018 L3MBTL3Q96JM7 780 aaPredicted RBP13.48□□□□□ -0.25
SKA3-203ENST00000400018 NYAP2Q9P242 653 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 PLIN4Q96Q06 1357 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 USP17L15C9J2P7 530 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 USP17L13C9JLJ4 530 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 USP17L11C9JVI0 530 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 USP17L18D6R9N7 530 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 USP17L22D6RA61 530 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 USP17L17D6RBQ6 530 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 USP17L19D6RCP7 530 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 USP17L20D6RJB6 530 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 CALM1P0DP23 149 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 CALM2P0DP24 149 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 CALM3P0DP25 149 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 USP17L24Q0WX57 530 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 USP17L6PQ6QN14 398 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 PURBQ96QR8 312 aaKnown RBP13.48□□□□□ -0.25
SKA3-203ENST00000400018 RNF26Q9BY78 433 aaPredicted RBP13.48□□□□□ -0.25
SKA3-203ENST00000400018 TANGO6Q9C0B7 1094 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 EMILIN3Q9NT22 766 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 A0A087WWV3 80 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 MMP1P03956 469 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 PDCP20941 246 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 TOB1P50616 345 aaPredicted RBP13.48□□□□□ -0.25
SKA3-203ENST00000400018 NAPAP54920 295 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 TRIM29Q14134 588 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 PFKFB3Q16875 520 aaPredicted RBP13.48□□□□□ -0.25
SKA3-203ENST00000400018 QRICH1Q2TAL8 776 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 RBM28Q9NW13 759 aaKnown RBP13.48□□□□□ -0.25
SKA3-203ENST00000400018 PCDHB6Q9Y5E3 794 aa13.48□□□□□ -0.25
SKA3-203ENST00000400018 ASNSP08243 561 aa13.47□□□□□ -0.25
SKA3-203ENST00000400018 SNHG28P0DPA3 235 aa13.47□□□□□ -0.25
SKA3-203ENST00000400018 BMP3P12645 472 aa13.47□□□□□ -0.25
SKA3-203ENST00000400018 HOXA13P31271 388 aaPredicted RBP13.47□□□□□ -0.25
SKA3-203ENST00000400018 UBXN2AP68543 259 aa13.47□□□□□ -0.25
SKA3-203ENST00000400018 CLIC6Q96NY7 704 aa13.47□□□□□ -0.25
SKA3-203ENST00000400018 P2RX7Q99572 595 aaKnown RBP13.47□□□□□ -0.25
SKA3-203ENST00000400018 SNCAIPQ9Y6H5 919 aa13.47□□□□□ -0.25
SKA3-203ENST00000400018 STXBP3O00186 592 aa13.47□□□□□ -0.25
SKA3-203ENST00000400018 IRF6O14896 467 aa13.47□□□□□ -0.25
SKA3-203ENST00000400018 TRAK2O60296 914 aa13.47□□□□□ -0.25
SKA3-203ENST00000400018 TREML2Q5T2D2 321 aa13.47□□□□□ -0.25
SKA3-203ENST00000400018 GBP4Q96PP9 640 aa13.47□□□□□ -0.25
SKA3-203ENST00000400018 ARHGEF10LQ9HCE6 1279 aa13.47□□□□□ -0.25
SKA3-203ENST00000400018 TMX2Q9Y320 296 aa13.47□□□□□ -0.25
SKA3-203ENST00000400018 GREB1LQ9C091 1923 aaPredicted RBP13.47□□□□□ -0.25
SKA3-203ENST00000400018 TBC1D12O60347 775 aa13.46□□□□□ -0.25
SKA3-203ENST00000400018 ZNF174Q15697 407 aa13.46□□□□□ -0.25
SKA3-203ENST00000400018 CDC37Q16543 378 aaPredicted RBP13.46□□□□□ -0.25
SKA3-203ENST00000400018 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.46□□□□□ -0.25
SKA3-203ENST00000400018 AGBL1Q96MI9 1066 aa13.46□□□□□ -0.25
SKA3-203ENST00000400018 MTA3Q9BTC8 594 aa13.46□□□□□ -0.25
SKA3-203ENST00000400018 PANK2Q9BZ23 570 aa13.46□□□□□ -0.25
SKA3-203ENST00000400018 PRR12Q9ULL5 1215 aa13.46□□□□□ -0.25
SKA3-203ENST00000400018 MAP3K10Q02779 954 aa13.46□□□□□ -0.26
SKA3-203ENST00000400018 MYSM1Q5VVJ2 828 aa13.46□□□□□ -0.26
SKA3-203ENST00000400018 CAVIN1Q6NZI2 390 aaKnown RBP13.46□□□□□ -0.26
SKA3-203ENST00000400018 SCYL3Q8IZE3 742 aa13.46□□□□□ -0.26
SKA3-203ENST00000400018 MKL1Q969V6 931 aa13.46□□□□□ -0.26
SKA3-203ENST00000400018 RRP36Q96EU6 259 aaKnown RBP13.46□□□□□ -0.26
SKA3-203ENST00000400018 PHF20Q9BVI0 1012 aa13.46□□□□□ -0.26
SKA3-203ENST00000400018 PICK1Q9NRD5 415 aa13.46□□□□□ -0.26
SKA3-203ENST00000400018 SMCO2A6NFE2 343 aa13.45□□□□□ -0.26
SKA3-203ENST00000400018 VCAM1P19320 739 aa13.45□□□□□ -0.26
SKA3-203ENST00000400018 PDE4CQ08493 712 aa13.45□□□□□ -0.26
SKA3-203ENST00000400018 SF3A1Q15459 793 aaKnown RBP13.45□□□□□ -0.26
SKA3-203ENST00000400018 USP50Q70EL3 339 aaPredicted RBP13.45□□□□□ -0.26
SKA3-203ENST00000400018 RPAP3Q9H6T3 665 aaPredicted RBP13.45□□□□□ -0.26
SKA3-203ENST00000400018 VCPKMTQ9H867 229 aa13.45□□□□□ -0.26
SKA3-203ENST00000400018 ATAD5Q96QE3 1844 aa13.45□□□□□ -0.26
SKA3-203ENST00000400018 CTNND1O60716 968 aaKnown RBP13.45□□□□□ -0.26
SKA3-203ENST00000400018 CDC25AP30304 524 aa13.45□□□□□ -0.26
SKA3-203ENST00000400018 GJA5P36382 358 aa13.45□□□□□ -0.26
SKA3-203ENST00000400018 INF2Q27J81 1249 aa13.45□□□□□ -0.26
SKA3-203ENST00000400018 LEO1Q8WVC0 666 aaPredicted RBP13.45□□□□□ -0.26
SKA3-203ENST00000400018 SPATA32Q96LK8 384 aa13.45□□□□□ -0.26
SKA3-203ENST00000400018 RIOX1Q9H6W3 641 aa13.45□□□□□ -0.26
SKA3-203ENST00000400018 SEC63Q9UGP8 760 aaKnown RBP13.45□□□□□ -0.26
SKA3-203ENST00000400018 NID2Q14112 1375 aa13.45□□□□□ -0.26
SKA3-203ENST00000400018 FLOT1O75955 427 aa13.44□□□□□ -0.26
SKA3-203ENST00000400018 LIG1P18858 919 aa13.44□□□□□ -0.26
SKA3-203ENST00000400018 RAVER2Q9HCJ3 691 aaKnown RBP13.44□□□□□ -0.26
SKA3-203ENST00000400018 CELF2O95319 508 aaKnown RBP13.44□□□□□ -0.26
SKA3-203ENST00000400018 CAMK4Q16566 473 aa13.44□□□□□ -0.26
SKA3-203ENST00000400018 DCAF15Q66K64 600 aa13.44□□□□□ -0.26
SKA3-203ENST00000400018 PCDHA1Q9Y5I3 950 aa13.44□□□□□ -0.26
SKA3-203ENST00000400018 SUPT20HL1Q3ZLR7 823 aa13.43□□□□□ -0.26
SKA3-203ENST00000400018 ASPRV1Q53RT3 343 aa13.43□□□□□ -0.26
SKA3-203ENST00000400018 SYDE2Q5VT97 1194 aa13.43□□□□□ -0.26
SKA3-203ENST00000400018 POTEEQ6S8J3 1075 aa13.43□□□□□ -0.26
SKA3-203ENST00000400018 GADL1Q6ZQY3 521 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms