RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 TUBE1Q9UJT0 475 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 PCDHB6Q9Y5E3 794 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 SALL3Q9BXA9 1300 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 PHF20L1A8MW92 1017 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 H0Y3Z8 333 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 NCK2O43639 380 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 AP1G2O75843 785 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 ZNF131P52739 623 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 MAGOHP61326 146 aaKnown RBP10.29□□□□□ -0.76
COL28A1-201ENST00000399429 DENND2CQ68D51 928 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 CEP128Q6ZU80 1094 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 ARMC9Q7Z3E5 817 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 SPDYE1Q8NFV5 336 aaPredicted RBP10.29□□□□□ -0.76
COL28A1-201ENST00000399429 MAGOHBQ96A72 148 aaKnown RBP10.29□□□□□ -0.76
COL28A1-201ENST00000399429 CYFIP2Q96F07 1278 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 HAUS7Q99871 368 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 TUBGCP2Q9BSJ2 902 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 MLXIPQ9HAP2 919 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 BATF3Q9NR55 127 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 RASAL2Q9UJF2 1139 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 TSKSQ9UJT2 592 aa10.29□□□□□ -0.76
COL28A1-201ENST00000399429 KRIT1O00522 736 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 CTDNEP1O95476 244 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 A1BGP04217 495 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 CABP4P57796 275 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 EIF4A1P60842 406 aaKnown RBP10.28□□□□□ -0.76
COL28A1-201ENST00000399429 DBN1Q16643 649 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 SLC4A8Q2Y0W8 1093 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 TTC38Q5R3I4 469 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 DTHD1Q6ZMT9 781 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 WDR66Q8TBY9 1149 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 NKIRAS1Q9NYS0 192 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 COL9A3Q14050 684 aaPredicted RBP10.28□□□□□ -0.76
COL28A1-201ENST00000399429 GRIPAP1Q4V328 841 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 MYCBPAPQ8TBZ2 947 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 TMEM87BQ96K49 555 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 CARD10Q9BWT7 1032 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 VCPKMTQ9H867 229 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 FAM114A2Q9NRY5 505 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 KLHL14Q9P2G3 628 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 MROH7-TTC4A0A0A0MT08 1334 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 PLCH2O75038 1416 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 A0A1B0GTH6 734 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 SLCO1A2P46721 670 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 MMP14P50281 582 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 DHX9Q08211 1270 aaKnown RBP10.28□□□□□ -0.76
COL28A1-201ENST00000399429 C6orf163Q5TEZ5 329 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 NOD2Q9HC29 1040 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 ZMYM6O95789 1325 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 ERBB3P21860 1342 aa10.28□□□□□ -0.76
COL28A1-201ENST00000399429 CPSF1Q10570 1443 aaKnown RBP10.28□□□□□ -0.76
COL28A1-201ENST00000399429 ALDH3A1P30838 453 aa10.27□□□□□ -0.76
COL28A1-201ENST00000399429 PTGISQ16647 500 aa10.27□□□□□ -0.76
COL28A1-201ENST00000399429 IFIT1BQ5T764 474 aaKnown RBP10.27□□□□□ -0.76
COL28A1-201ENST00000399429 KRT26Q7Z3Y9 468 aa10.27□□□□□ -0.76
COL28A1-201ENST00000399429 TMTC2Q8N394 836 aa10.27□□□□□ -0.76
COL28A1-201ENST00000399429 ATG3Q9NT62 314 aa10.27□□□□□ -0.76
COL28A1-201ENST00000399429 DMGDHQ9UI17 866 aaKnown RBP10.27□□□□□ -0.76
COL28A1-201ENST00000399429 TMEM110-MUSTN1A8MSY1 372 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 CAND2O75155 1236 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 FAM107AO95990 144 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 GYPCP04921 128 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 ADCY1Q08828 1119 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 PROSER3Q2NL68 480 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 TCP11X2Q5H9J9 407 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 FAM43BQ6ZT52 329 aaPredicted RBP10.27□□□□□ -0.77
COL28A1-201ENST00000399429 NFATC2IPQ8NCF5 419 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 CCHCR1Q8TD31 782 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 APPBP2Q92624 585 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 CNNM2Q9H8M5 875 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 LRRC7Q96NW7 1537 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 SUN1O94901 812 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 CDC27P30260 824 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 CTDSPL2Q05D32 466 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 DIXDC1Q155Q3 683 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 EZH2Q15910 746 aaKnown RBP10.27□□□□□ -0.77
COL28A1-201ENST00000399429 TAOK1Q7L7X3 1001 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 OR2W6PQ8NHA6 318 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 WHAMMQ8TF30 809 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 LMBR1Q8WVP7 490 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 OSBPL1AQ9BXW6 950 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 FLT4P35916 1363 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 GCKRQ14397 625 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 KCNB1Q14721 858 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 SLMAPQ14BN4 828 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 ZNF365Q70YC5 407 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 CUL5Q93034 780 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 FERMT2Q96AC1 680 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 PAGE5Q96GU1 130 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 SEC16BQ96JE7 1060 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 OSBPL9Q96SU4 736 aa10.27□□□□□ -0.77
COL28A1-201ENST00000399429 ALDH8A1Q9H2A2 487 aaPredicted RBP10.27□□□□□ -0.77
COL28A1-201ENST00000399429 CWC25Q9NXE8 425 aaPredicted RBP10.27□□□□□ -0.77
COL28A1-201ENST00000399429 TRAF5O00463 557 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 PRDM1O75626 825 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 CPP00450 1065 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 RPN1P04843 607 aaKnown RBP10.26□□□□□ -0.77
COL28A1-201ENST00000399429 EIF4A3P38919 411 aaKnown RBP10.26□□□□□ -0.77
COL28A1-201ENST00000399429 DRP2Q13474 957 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 APOA5Q6Q788 366 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms