RNA–Protein interactions for RNA: ENST00000398510.7

CHD9-202, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best) BASIC

Gene CHD9, Length 11,337 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-202ENST00000398510 TBCCQ15814 346 aa3□□□□□ -1.93
CHD9-202ENST00000398510 RTN1Q16799 776 aa3□□□□□ -1.93
CHD9-202ENST00000398510 SPOUT1Q5T280 376 aaKnown RBP3□□□□□ -1.93
CHD9-202ENST00000398510 PDXDC1Q6P996 788 aa3□□□□□ -1.93
CHD9-202ENST00000398510 ANKRD35Q8N283 1001 aa3□□□□□ -1.93
CHD9-202ENST00000398510 URGCPQ8TCY9 931 aa3□□□□□ -1.93
CHD9-202ENST00000398510 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3□□□□□ -1.93
CHD9-202ENST00000398510 USP21Q9UK80 565 aa3□□□□□ -1.93
CHD9-202ENST00000398510 EVI5O60447 810 aa3□□□□□ -1.93
CHD9-202ENST00000398510 PPFIA4O75335 1185 aa3□□□□□ -1.93
CHD9-202ENST00000398510 ALDH1A1P00352 501 aa3□□□□□ -1.93
CHD9-202ENST00000398510 KCNA6P17658 529 aa3□□□□□ -1.93
CHD9-202ENST00000398510 ECE1P42892 770 aa3□□□□□ -1.93
CHD9-202ENST00000398510 UBXN2AP68543 259 aa3□□□□□ -1.93
CHD9-202ENST00000398510 KCTD2Q14681 263 aa3□□□□□ -1.93
CHD9-202ENST00000398510 ATP2B3Q16720 1220 aa3□□□□□ -1.93
CHD9-202ENST00000398510 LMBRD2Q68DH5 695 aaPredicted RBP3□□□□□ -1.93
CHD9-202ENST00000398510 MIGA2Q7L4E1 593 aa3□□□□□ -1.93
CHD9-202ENST00000398510 MAP7D3Q8IWC1 876 aa3□□□□□ -1.93
CHD9-202ENST00000398510 TMEM57Q8N5G2 664 aa3□□□□□ -1.93
CHD9-202ENST00000398510 PLBD2Q8NHP8 589 aa3□□□□□ -1.93
CHD9-202ENST00000398510 PUF60Q9UHX1 559 aaKnown RBP3□□□□□ -1.93
CHD9-202ENST00000398510 MRPL11Q9Y3B7 192 aaKnown RBP3□□□□□ -1.93
CHD9-202ENST00000398510 CCDC78A2IDD5 438 aa3□□□□□ -1.93
CHD9-202ENST00000398510 BACH1O14867 736 aa3□□□□□ -1.93
CHD9-202ENST00000398510 PAMP19021 973 aa3□□□□□ -1.93
CHD9-202ENST00000398510 RXRBP28702 533 aa3□□□□□ -1.93
CHD9-202ENST00000398510 HSPA4P34932 840 aa3□□□□□ -1.93
CHD9-202ENST00000398510 ZBTB16Q05516 673 aa3□□□□□ -1.93
CHD9-202ENST00000398510 CWC27Q6UX04 472 aaKnown RBP3□□□□□ -1.93
CHD9-202ENST00000398510 LARGE2Q8N3Y3 721 aa3□□□□□ -1.93
CHD9-202ENST00000398510 LINS1Q8NG48 757 aa3□□□□□ -1.93
CHD9-202ENST00000398510 BSNDQ8WZ55 320 aa3□□□□□ -1.93
CHD9-202ENST00000398510 ALKQ9UM73 1620 aa3□□□□□ -1.93
CHD9-202ENST00000398510 SYNGAP1Q96PV0 1343 aa3□□□□□ -1.93
CHD9-202ENST00000398510 RBBP6Q7Z6E9 1792 aaKnown RBP3□□□□□ -1.93
CHD9-202ENST00000398510 PSMC4P43686 418 aa3□□□□□ -1.93
CHD9-202ENST00000398510 ARHGAP4P98171 946 aa3□□□□□ -1.93
CHD9-202ENST00000398510 RRAGBQ5VZM2 374 aa3□□□□□ -1.93
CHD9-202ENST00000398510 SV2BQ7L1I2 683 aa3□□□□□ -1.93
CHD9-202ENST00000398510 TRIM50Q86XT4 487 aa3□□□□□ -1.93
CHD9-202ENST00000398510 MB21D1Q8N884 522 aa3□□□□□ -1.93
CHD9-202ENST00000398510 SPC24Q8NBT2 197 aa3□□□□□ -1.93
CHD9-202ENST00000398510 RSPH1Q8WYR4 309 aa3□□□□□ -1.93
CHD9-202ENST00000398510 SKA1Q96BD8 255 aa3□□□□□ -1.93
CHD9-202ENST00000398510 NACC1Q96RE7 527 aa3□□□□□ -1.93
CHD9-202ENST00000398510 TMEM106CQ9BVX2 250 aa3□□□□□ -1.93
CHD9-202ENST00000398510 MAGEB5Q9BZ81 275 aa3□□□□□ -1.93
CHD9-202ENST00000398510 CENPHQ9H3R5 247 aa3□□□□□ -1.93
CHD9-202ENST00000398510 CHMP2BQ9UQN3 213 aa3□□□□□ -1.93
CHD9-202ENST00000398510 EMSYQ7Z589 1322 aa3□□□□□ -1.93
CHD9-202ENST00000398510 NRKQ7Z2Y5 1582 aa3□□□□□ -1.93
CHD9-202ENST00000398510 TOGARAM1Q9Y4F4 1720 aa3□□□□□ -1.93
CHD9-202ENST00000398510 ADAMTS2O95450 1211 aa3□□□□□ -1.93
CHD9-202ENST00000398510 ERCC5P28715 1186 aaPredicted RBP3□□□□□ -1.93
CHD9-202ENST00000398510 FAM193AP78312 1265 aa3□□□□□ -1.93
CHD9-202ENST00000398510 PLD1Q13393 1074 aa3□□□□□ -1.93
CHD9-202ENST00000398510 RCSD1Q6JBY9 416 aa3□□□□□ -1.93
CHD9-202ENST00000398510 ENOX1Q8TC92 643 aaKnown RBP3□□□□□ -1.93
CHD9-202ENST00000398510 LPIN2Q92539 896 aa3□□□□□ -1.93
CHD9-202ENST00000398510 USP13Q92995 863 aaPredicted RBP3□□□□□ -1.93
CHD9-202ENST00000398510 AK8Q96MA6 479 aa3□□□□□ -1.93
CHD9-202ENST00000398510 BAG1Q99933 345 aaPredicted RBP3□□□□□ -1.93
CHD9-202ENST00000398510 TOPORSQ9NS56 1045 aaPredicted RBP3□□□□□ -1.93
CHD9-202ENST00000398510 FAF1Q9UNN5 650 aaPredicted RBP3□□□□□ -1.93
CHD9-202ENST00000398510 TMEM131LA2VDJ0 1609 aa3□□□□□ -1.93
CHD9-202ENST00000398510 STK36Q9NRP7 1315 aa3□□□□□ -1.93
CHD9-202ENST00000398510 FOXP2O15409 715 aa3□□□□□ -1.93
CHD9-202ENST00000398510 TRAPPC3O43617 180 aa3□□□□□ -1.93
CHD9-202ENST00000398510 KRT16P08779 473 aa3□□□□□ -1.93
CHD9-202ENST00000398510 CCND2P30279 289 aa3□□□□□ -1.93
CHD9-202ENST00000398510 RCAN1P53805 252 aa3□□□□□ -1.93
CHD9-202ENST00000398510 SLC12A2P55011 1212 aa3□□□□□ -1.93
CHD9-202ENST00000398510 PHEXP78562 749 aa3□□□□□ -1.93
CHD9-202ENST00000398510 MTERF2Q49AM1 385 aa3□□□□□ -1.93
CHD9-202ENST00000398510 MIS18BP1Q6P0N0 1132 aa3□□□□□ -1.93
CHD9-202ENST00000398510 DTHD1Q6ZMT9 781 aa3□□□□□ -1.93
CHD9-202ENST00000398510 INTS4Q96HW7 963 aaKnown RBP3□□□□□ -1.93
CHD9-202ENST00000398510 TRIM4Q9C037 500 aa3□□□□□ -1.93
CHD9-202ENST00000398510 PRDM10Q9NQV6 1147 aa3□□□□□ -1.93
CHD9-202ENST00000398510 DNAJC17Q9NVM6 304 aaKnown RBP3□□□□□ -1.93
CHD9-202ENST00000398510 MAP3K20Q9NYL2 800 aaKnown RBP3□□□□□ -1.93
CHD9-202ENST00000398510 ZNF646O15015 1829 aaPredicted RBP3□□□□□ -1.93
CHD9-202ENST00000398510 NUP98P52948 1817 aa3□□□□□ -1.93
CHD9-202ENST00000398510 PATL2C9JE40 543 aaKnown RBP3□□□□□ -1.93
CHD9-202ENST00000398510 CASQ2O14958 399 aaPredicted RBP3□□□□□ -1.93
CHD9-202ENST00000398510 FOSP01100 380 aaPredicted RBP3□□□□□ -1.93
CHD9-202ENST00000398510 SKIP12755 728 aa3□□□□□ -1.93
CHD9-202ENST00000398510 CBX1P83916 185 aa3□□□□□ -1.93
CHD9-202ENST00000398510 MAP3K10Q02779 954 aa3□□□□□ -1.93
CHD9-202ENST00000398510 GEN1Q17RS7 908 aa3□□□□□ -1.93
CHD9-202ENST00000398510 RNF219Q5W0B1 726 aaPredicted RBP3□□□□□ -1.93
CHD9-202ENST00000398510 PPP1R18Q6NYC8 613 aa3□□□□□ -1.93
CHD9-202ENST00000398510 CCDC62Q6P9F0 684 aa3□□□□□ -1.93
CHD9-202ENST00000398510 PPP4R1Q8TF05 950 aa3□□□□□ -1.93
CHD9-202ENST00000398510 TCP11Q8WWU5 503 aa3□□□□□ -1.93
CHD9-202ENST00000398510 CDKL2Q92772 493 aa3□□□□□ -1.93
CHD9-202ENST00000398510 GBP5Q96PP8 586 aa3□□□□□ -1.93
CHD9-202ENST00000398510 TRIM56Q9BRZ2 755 aaKnown RBP3□□□□□ -1.93
CHD9-202ENST00000398510 RAB17Q9H0T7 212 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms