RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 GOLGA5Q8TBA6 731 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 NAPGQ99747 312 aaPredicted RBP7.9□□□□□ -1.14
UPF2-203ENST00000397053 TEKT3Q9BXF9 490 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 YTHDC2Q9H6S0 1430 aaKnown RBP7.9□□□□□ -1.14
UPF2-203ENST00000397053 RIMS2Q9UQ26 1411 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 USH1CQ9Y6N9 552 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 ZNF532Q9HCE3 1301 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 CLRN2A0PK11 232 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 ABCB4P21439 1286 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 DMP1Q13316 513 aaPredicted RBP7.9□□□□□ -1.14
UPF2-203ENST00000397053 ACBD5Q5T8D3 534 aaPredicted RBP7.9□□□□□ -1.14
UPF2-203ENST00000397053 SLFN13Q68D06 897 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 ZNF772Q68DY9 489 aaPredicted RBP7.9□□□□□ -1.14
UPF2-203ENST00000397053 CEP85Q6P2H3 762 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 PPM1KQ8N3J5 372 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 SLC10A4Q96EP9 437 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 PSMB7Q99436 277 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 NCOA5Q9HCD5 579 aaKnown RBP7.9□□□□□ -1.14
UPF2-203ENST00000397053 PPFIA2O75334 1257 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 MKRN3Q13064 507 aaKnown RBP7.9□□□□□ -1.14
UPF2-203ENST00000397053 POLA2Q14181 598 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 N4BP2L2Q92802 583 aaPredicted RBP7.9□□□□□ -1.14
UPF2-203ENST00000397053 HVCN1Q96D96 273 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 TTC25Q96NG3 672 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 FAM207AQ9NSI2 230 aaPredicted RBP7.9□□□□□ -1.14
UPF2-203ENST00000397053 TAB2Q9NYJ8 693 aa7.9□□□□□ -1.14
UPF2-203ENST00000397053 FAM170AA1A519 330 aa7.9□□□□□ -1.15
UPF2-203ENST00000397053 WDR64B1ANS9 1081 aa7.9□□□□□ -1.15
UPF2-203ENST00000397053 NDUFAB1O14561 156 aa7.9□□□□□ -1.15
UPF2-203ENST00000397053 VPS41P49754 854 aa7.9□□□□□ -1.15
UPF2-203ENST00000397053 ABCB5Q2M3G0 1257 aa7.9□□□□□ -1.15
UPF2-203ENST00000397053 EFCAB13Q8IY85 973 aa7.9□□□□□ -1.15
UPF2-203ENST00000397053 TTC30BQ8N4P2 665 aa7.9□□□□□ -1.15
UPF2-203ENST00000397053 PRPF38AQ8NAV1 312 aaKnown RBP7.9□□□□□ -1.15
UPF2-203ENST00000397053 U2AF1L4Q8WU68 220 aaKnown RBP7.9□□□□□ -1.15
UPF2-203ENST00000397053 STAMQ92783 540 aa7.9□□□□□ -1.15
UPF2-203ENST00000397053 ATP6V0A1Q93050 837 aa7.9□□□□□ -1.15
UPF2-203ENST00000397053 FTOQ9C0B1 505 aaKnown RBP eCLIP7.9□□□□□ -1.152e-8■■□□□ 13.3
UPF2-203ENST00000397053 DCTPP1Q9H773 170 aa7.9□□□□□ -1.15
UPF2-203ENST00000397053 ZBBXA8MT70 800 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 N4BP1O75113 896 aaKnown RBP7.89□□□□□ -1.15
UPF2-203ENST00000397053 CHMLP26374 656 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 PRPSAP1Q14558 356 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 CCDC93Q567U6 631 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 FASTKD5Q7L8L6 764 aaKnown RBP7.89□□□□□ -1.15
UPF2-203ENST00000397053 KBTBD3Q8NAB2 608 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 RSRC1Q96IZ7 334 aaKnown RBP7.89□□□□□ -1.15
UPF2-203ENST00000397053 CSRNP1Q96S65 589 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 SNX25Q9H3E2 840 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 ARMCX3Q9UH62 379 aaPredicted RBP7.89□□□□□ -1.15
UPF2-203ENST00000397053 ATF5Q9Y2D1 282 aaPredicted RBP7.89□□□□□ -1.15
UPF2-203ENST00000397053 TEX14Q8IWB6 1497 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 F8W8V4 182 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 DPYSL4O14531 572 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 IGHDP01880 384 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 ZAP70P43403 619 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 RECQLP46063 649 aaPredicted RBP7.89□□□□□ -1.15
UPF2-203ENST00000397053 NFX1Q12986 1120 aaKnown RBP7.89□□□□□ -1.15
UPF2-203ENST00000397053 PHLDB2Q86SQ0 1253 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 LRRC47Q8N1G4 583 aaKnown RBP7.89□□□□□ -1.15
UPF2-203ENST00000397053 PHKBQ93100 1093 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 SDCCAG3Q96C92 435 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 PCDHA1Q9Y5I3 950 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 MAD1L1Q9Y6D9 718 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 HNRNPDLO14979 420 aaKnown RBP7.89□□□□□ -1.15
UPF2-203ENST00000397053 DBN1Q16643 649 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 RRAGAQ7L523 313 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 HDXQ7Z353 690 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 FGD4Q96M96 766 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 VPS54Q9P1Q0 977 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 AMFRQ9UKV5 643 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 PSDA5PKW4 1024 aaPredicted RBP7.89□□□□□ -1.15
UPF2-203ENST00000397053 MAP3K7O43318 606 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 SMIM24O75264 130 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 GNA14O95837 355 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 CPA1P15085 419 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 PHBP35232 272 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 ECE1P42892 770 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 USP14P54578 494 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 MAP3K21Q5TCX8 1036 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 KRT40Q6A162 431 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 LMNTD2Q8IXW0 634 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.89□□□□□ -1.15
UPF2-203ENST00000397053 CDKL2Q92772 493 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 ZNF653Q96CK0 615 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 COL4A3BPQ9Y5P4 624 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 ARAP1Q96P48 1450 aa7.89□□□□□ -1.15
UPF2-203ENST00000397053 H7C0C1 242 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 TROVE2P10155 538 aaKnown RBP eCLIP7.88□□□□□ -1.15
UPF2-203ENST00000397053 ATP5OP48047 213 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 IREB2P48200 963 aaKnown RBP7.88□□□□□ -1.15
UPF2-203ENST00000397053 INPP1P49441 399 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 KRT71Q3SY84 523 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 TMTC1Q8IUR5 882 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 MYOCDQ8IZQ8 938 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 SLC52A2Q9HAB3 445 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 SLC13A4Q9UKG4 626 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 KCNJ14Q9UNX9 436 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 NFE2L3Q9Y4A8 694 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 EFCAB5A4FU69 1503 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms