RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 BMP2KLQ5H9B9 411 aa27.88■■■□□ 2.05
SHMT1-204ENST00000395682 KRT23Q9C075 422 aa27.88■■■□□ 2.05
SHMT1-204ENST00000395682 U3KPZ7 1027 aaPredicted RBP27.88■■■□□ 2.05
SHMT1-204ENST00000395682 CENPBP07199 599 aaPredicted RBP27.87■■■□□ 2.05
SHMT1-204ENST00000395682 HOXC6P09630 235 aa27.87■■■□□ 2.05
SHMT1-204ENST00000395682 FCER1AP12319 257 aa27.87■■■□□ 2.05
SHMT1-204ENST00000395682 STAT2P52630 851 aa27.87■■■□□ 2.05
SHMT1-204ENST00000395682 FAM160B2Q86V87 743 aa27.87■■■□□ 2.05
SHMT1-204ENST00000395682 ABRAQ8N0Z2 381 aa27.87■■■□□ 2.05
SHMT1-204ENST00000395682 DEFB118Q96PH6 123 aa27.87■■■□□ 2.05
SHMT1-204ENST00000395682 TEX13BQ9BXU2 312 aa27.87■■■□□ 2.05
SHMT1-204ENST00000395682 SLC38A10Q9HBR0 1119 aa27.87■■■□□ 2.05
SHMT1-204ENST00000395682 HMX1Q9NP08 348 aaPredicted RBP27.87■■■□□ 2.05
SHMT1-204ENST00000395682 ZSWIM5Q9P217 1185 aa27.87■■■□□ 2.05
SHMT1-204ENST00000395682 RPTORQ8N122 1335 aa27.87■■■□□ 2.05
SHMT1-204ENST00000395682 BRCA2P51587 3418 aa27.86■■■□□ 2.05
SHMT1-204ENST00000395682 COL11A1P12107 1806 aaPredicted RBP27.86■■■□□ 2.05
SHMT1-204ENST00000395682 COPB2P35606 906 aa27.86■■■□□ 2.05
SHMT1-204ENST00000395682 SLC4A3P48751 1232 aa27.86■■■□□ 2.05
SHMT1-204ENST00000395682 SNRNP48Q6IEG0 339 aaKnown RBP27.86■■■□□ 2.05
SHMT1-204ENST00000395682 RASGRP2Q7LDG7 609 aa27.86■■■□□ 2.05
SHMT1-204ENST00000395682 IQCA1Q86XH1 822 aa27.86■■■□□ 2.05
SHMT1-204ENST00000395682 CPXCR1Q8N123 301 aa27.86■■■□□ 2.05
SHMT1-204ENST00000395682 NPLOC4Q8TAT6 608 aa27.86■■■□□ 2.05
SHMT1-204ENST00000395682 U2AF1L4Q8WU68 220 aaKnown RBP27.86■■■□□ 2.05
SHMT1-204ENST00000395682 DCAF4Q8WV16 495 aa27.86■■■□□ 2.05
SHMT1-204ENST00000395682 CNNM2Q9H8M5 875 aa27.86■■■□□ 2.05
SHMT1-204ENST00000395682 RAVER2Q9HCJ3 691 aaKnown RBP27.86■■■□□ 2.05
SHMT1-204ENST00000395682 PAK6Q9NQU5 681 aaPredicted RBP27.86■■■□□ 2.05
SHMT1-204ENST00000395682 ATP2A1O14983 1001 aa27.85■■■□□ 2.05
SHMT1-204ENST00000395682 PLA2G6O60733 806 aa27.85■■■□□ 2.05
SHMT1-204ENST00000395682 COBLO75128 1261 aa27.85■■■□□ 2.05
SHMT1-204ENST00000395682 SGPL1O95470 568 aa27.85■■■□□ 2.05
SHMT1-204ENST00000395682 PRKAR2AP13861 404 aaKnown RBP27.85■■■□□ 2.05
SHMT1-204ENST00000395682 CACNB2Q08289 660 aaPredicted RBP27.85■■■□□ 2.05
SHMT1-204ENST00000395682 CCDC96Q2M329 555 aa27.85■■■□□ 2.05
SHMT1-204ENST00000395682 CCDC178Q5BJE1 867 aa27.85■■■□□ 2.05
SHMT1-204ENST00000395682 MAP3K21Q5TCX8 1036 aa27.85■■■□□ 2.05
SHMT1-204ENST00000395682 DGKHQ86XP1 1220 aa27.85■■■□□ 2.05
SHMT1-204ENST00000395682 MAP4K1Q92918 833 aa27.85■■■□□ 2.05
SHMT1-204ENST00000395682 XRN2Q9H0D6 950 aaKnown RBP eCLIP27.85■■■□□ 2.05
SHMT1-204ENST00000395682 FLRT1Q9NZU1 646 aa27.85■■■□□ 2.05
SHMT1-204ENST00000395682 LAMA4Q16363 1823 aa27.85■■■□□ 2.05
SHMT1-204ENST00000395682 FDX1P10109 184 aa27.84■■■□□ 2.05
SHMT1-204ENST00000395682 MFSD14CQ5VZR4 134 aa27.84■■■□□ 2.05
SHMT1-204ENST00000395682 KIAA1211Q6ZU35 1233 aa27.84■■■□□ 2.05
SHMT1-204ENST00000395682 SHISA4Q96DD7 197 aa27.84■■■□□ 2.05
SHMT1-204ENST00000395682 ZSCAN10Q96SZ4 725 aaPredicted RBP27.84■■■□□ 2.05
SHMT1-204ENST00000395682 MMP19Q99542 508 aa27.84■■■□□ 2.05
SHMT1-204ENST00000395682 SLC5A4Q9NY91 659 aa27.84■■■□□ 2.05
SHMT1-204ENST00000395682 RIPK3Q9Y572 518 aa27.84■■■□□ 2.05
SHMT1-204ENST00000395682 TNRC18O15417 2968 aaPredicted RBP27.84■■■□□ 2.05
SHMT1-204ENST00000395682 TFRCP02786 760 aaKnown RBP27.83■■■□□ 2.05
SHMT1-204ENST00000395682 CYP21A2P08686 494 aa27.83■■■□□ 2.05
SHMT1-204ENST00000395682 ESYT1Q9BSJ8 1104 aa27.83■■■□□ 2.05
SHMT1-204ENST00000395682 OAZ1P54368 228 aa27.82■■■□□ 2.04
SHMT1-204ENST00000395682 KCTD2Q14681 263 aa27.82■■■□□ 2.04
SHMT1-204ENST00000395682 PRR12Q9ULL5 1215 aa27.82■■■□□ 2.04
SHMT1-204ENST00000395682 TRDNQ13061 729 aa27.81■■■□□ 2.04
SHMT1-204ENST00000395682 TTBK2Q6IQ55 1244 aa27.81■■■□□ 2.04
SHMT1-204ENST00000395682 ANKS1AQ92625 1134 aa27.81■■■□□ 2.04
SHMT1-204ENST00000395682 GPCPD1Q9NPB8 672 aa27.81■■■□□ 2.04
SHMT1-204ENST00000395682 RBM8AQ9Y5S9 174 aaKnown RBP27.81■■■□□ 2.04
SHMT1-204ENST00000395682 FRMPD2Q68DX3 1309 aaPredicted RBP27.81■■■□□ 2.04
SHMT1-204ENST00000395682 PGK2P07205 417 aa27.8■■■□□ 2.04
SHMT1-204ENST00000395682 PDHBP11177 359 aa27.8■■■□□ 2.04
SHMT1-204ENST00000395682 SNAP25P60880 206 aa27.8■■■□□ 2.04
SHMT1-204ENST00000395682 UBAC1Q9BSL1 405 aa27.8■■■□□ 2.04
SHMT1-204ENST00000395682 CYP2C19P33261 490 aa27.79■■■□□ 2.04
SHMT1-204ENST00000395682 SLC16A2P36021 539 aa27.79■■■□□ 2.04
SHMT1-204ENST00000395682 OLFML2BQ68BL8 750 aa27.79■■■□□ 2.04
SHMT1-204ENST00000395682 ENAHQ8N8S7 591 aaPredicted RBP27.79■■■□□ 2.04
SHMT1-204ENST00000395682 LSG1Q9H089 658 aaKnown RBP27.79■■■□□ 2.04
SHMT1-204ENST00000395682 CRISPLD2Q9H0B8 497 aa27.79■■■□□ 2.04
SHMT1-204ENST00000395682 KAT14Q9H8E8 782 aa27.79■■■□□ 2.04
SHMT1-204ENST00000395682 TAF6LQ9Y6J9 622 aa27.79■■■□□ 2.04
SHMT1-204ENST00000395682 TNKSO95271 1327 aa27.78■■■□□ 2.04
SHMT1-204ENST00000395682 IGHA2P01877 340 aa27.78■■■□□ 2.04
SHMT1-204ENST00000395682 CAPN2P17655 700 aa27.78■■■□□ 2.04
SHMT1-204ENST00000395682 CCND3P30281 292 aaPredicted RBP27.78■■■□□ 2.04
SHMT1-204ENST00000395682 BTNL9Q6UXG8 535 aa27.78■■■□□ 2.04
SHMT1-204ENST00000395682 CYB5R4Q7L1T6 521 aa27.78■■■□□ 2.04
SHMT1-204ENST00000395682 AGBL1Q96MI9 1066 aa27.78■■■□□ 2.04
SHMT1-204ENST00000395682 ZNF536O15090 1300 aa27.77■■■□□ 2.04
SHMT1-204ENST00000395682 ZNF236Q9UL36 1845 aa27.77■■■□□ 2.04
SHMT1-204ENST00000395682 E7EWF7 191 aa27.77■■■□□ 2.04
SHMT1-204ENST00000395682 SNHG28P0DPA3 235 aa27.77■■■□□ 2.04
SHMT1-204ENST00000395682 ZNF543Q08ER8 600 aa27.77■■■□□ 2.04
SHMT1-204ENST00000395682 SYDE2Q5VT97 1194 aa27.77■■■□□ 2.04
SHMT1-204ENST00000395682 CCDC174Q6PII3 467 aa27.77■■■□□ 2.04
SHMT1-204ENST00000395682 PNMA1Q8ND90 353 aa27.77■■■□□ 2.04
SHMT1-204ENST00000395682 CHST13Q8NET6 341 aa27.77■■■□□ 2.04
SHMT1-204ENST00000395682 MAML3Q96JK9 1138 aa27.77■■■□□ 2.04
SHMT1-204ENST00000395682 HOMER2Q9NSB8 354 aa27.77■■■□□ 2.04
SHMT1-204ENST00000395682 FBXO40Q9UH90 709 aa27.77■■■□□ 2.04
SHMT1-204ENST00000395682 ZNF792Q3KQV3 632 aa27.76■■■□□ 2.03
SHMT1-204ENST00000395682 ERICH6BQ5W0A0 696 aa27.76■■■□□ 2.03
SHMT1-204ENST00000395682 CASC1Q6TDU7 716 aa27.76■■■□□ 2.03
SHMT1-204ENST00000395682 DDX11Q96FC9 970 aa27.76■■■□□ 2.03
SHMT1-204ENST00000395682 PPP4R2Q9NY27 417 aa27.76■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms