RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 NUDT12Q9BQG2 462 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 MTA3Q9BTC8 594 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 ERICH2A1L162 156 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 IFIT3O14879 490 aaKnown RBP25.46■■□□□ 1.67
CLN3-207ENST00000395653 EPB41L2O43491 1005 aaKnown RBP25.46■■□□□ 1.67
CLN3-207ENST00000395653 COPB2P35606 906 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 ANTXR2P58335 489 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 ZNF543Q08ER8 600 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 TSGA10IPQ3SY00 556 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 MORN1Q5T089 497 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 WDR78Q5VTH9 848 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 BTNL9Q6UXG8 535 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 NBPF11Q86T75 865 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 SLAIN1Q8ND83 568 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 PXYLP1Q8TE99 480 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 TEX13BQ9BXU2 312 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 CTDP1Q9Y5B0 961 aaPredicted RBP25.46■■□□□ 1.67
CLN3-207ENST00000395653 IVNS1ABPQ9Y6Y0 642 aa25.46■■□□□ 1.67
CLN3-207ENST00000395653 PLXNB2O15031 1838 aa25.45■■□□□ 1.67
CLN3-207ENST00000395653 DOCK3Q8IZD9 2030 aa25.45■■□□□ 1.67
CLN3-207ENST00000395653 ZKSCAN1P17029 563 aaPredicted RBP25.45■■□□□ 1.66
CLN3-207ENST00000395653 PTPREP23469 700 aa25.45■■□□□ 1.66
CLN3-207ENST00000395653 GRK4P32298 578 aa25.45■■□□□ 1.66
CLN3-207ENST00000395653 OAZ1P54368 228 aa25.45■■□□□ 1.66
CLN3-207ENST00000395653 USP6NLQ92738 828 aa25.45■■□□□ 1.66
CLN3-207ENST00000395653 PRR12Q9ULL5 1215 aa25.45■■□□□ 1.66
CLN3-207ENST00000395653 FRMPD2Q68DX3 1309 aaPredicted RBP25.44■■□□□ 1.66
CLN3-207ENST00000395653 SLC15A5A6NIM6 579 aa25.44■■□□□ 1.66
CLN3-207ENST00000395653 CCDC85CA6NKD9 419 aa25.44■■□□□ 1.66
CLN3-207ENST00000395653 STRNO43815 780 aa25.44■■□□□ 1.66
CLN3-207ENST00000395653 ADCY3O60266 1144 aa25.44■■□□□ 1.66
CLN3-207ENST00000395653 MCM5P33992 734 aa25.44■■□□□ 1.66
CLN3-207ENST00000395653 GPATCH4Q5T3I0 446 aaKnown RBP25.44■■□□□ 1.66
CLN3-207ENST00000395653 NCAPG2Q86XI2 1143 aa25.44■■□□□ 1.66
CLN3-207ENST00000395653 GRB14Q14449 540 aa25.43■■□□□ 1.66
CLN3-207ENST00000395653 KRT32Q14532 448 aa25.43■■□□□ 1.66
CLN3-207ENST00000395653 WTAPQ15007 396 aa25.43■■□□□ 1.66
CLN3-207ENST00000395653 SNRNP48Q6IEG0 339 aaKnown RBP25.43■■□□□ 1.66
CLN3-207ENST00000395653 TTBK2Q6IQ55 1244 aa25.43■■□□□ 1.66
CLN3-207ENST00000395653 CHST3Q7LGC8 479 aa25.43■■□□□ 1.66
CLN3-207ENST00000395653 RASEFQ8IZ41 740 aa25.43■■□□□ 1.66
CLN3-207ENST00000395653 SH3TC2Q8TF17 1288 aa25.43■■□□□ 1.66
CLN3-207ENST00000395653 ZNF333Q96JL9 665 aa25.43■■□□□ 1.66
CLN3-207ENST00000395653 GPCPD1Q9NPB8 672 aa25.43■■□□□ 1.66
CLN3-207ENST00000395653 XRCC5P13010 732 aaKnown RBP25.42■■□□□ 1.66
CLN3-207ENST00000395653 HSPA4P34932 840 aa25.42■■□□□ 1.66
CLN3-207ENST00000395653 RGS2P41220 211 aa25.42■■□□□ 1.66
CLN3-207ENST00000395653 MAP2K5Q13163 448 aa25.42■■□□□ 1.66
CLN3-207ENST00000395653 TMEM67Q5HYA8 995 aa25.42■■□□□ 1.66
CLN3-207ENST00000395653 IFFO2Q5TF58 517 aa25.42■■□□□ 1.66
CLN3-207ENST00000395653 IGDCC4Q8TDY8 1250 aa25.42■■□□□ 1.66
CLN3-207ENST00000395653 KCNB2Q92953 911 aa25.42■■□□□ 1.66
CLN3-207ENST00000395653 ZNF236Q9UL36 1845 aa25.42■■□□□ 1.66
CLN3-207ENST00000395653 PRC1O43663 620 aa25.41■■□□□ 1.66
CLN3-207ENST00000395653 SYDE2Q5VT97 1194 aa25.41■■□□□ 1.66
CLN3-207ENST00000395653 ABRAQ8N0Z2 381 aa25.41■■□□□ 1.66
CLN3-207ENST00000395653 CPXCR1Q8N123 301 aa25.41■■□□□ 1.66
CLN3-207ENST00000395653 TMEM87BQ96K49 555 aa25.41■■□□□ 1.66
CLN3-207ENST00000395653 RAVER2Q9HCJ3 691 aaKnown RBP25.41■■□□□ 1.66
CLN3-207ENST00000395653 CYP2B6P20813 491 aa25.4■■□□□ 1.66
CLN3-207ENST00000395653 SLC16A2P36021 539 aa25.4■■□□□ 1.66
CLN3-207ENST00000395653 ASPRV1Q53RT3 343 aa25.4■■□□□ 1.66
CLN3-207ENST00000395653 NEK1Q96PY6 1258 aa25.4■■□□□ 1.66
CLN3-207ENST00000395653 APBA2Q99767 749 aa25.4■■□□□ 1.66
CLN3-207ENST00000395653 CENPFP49454 3210 aa25.4■■□□□ 1.66
CLN3-207ENST00000395653 ELNP15502 786 aa25.39■■□□□ 1.66
CLN3-207ENST00000395653 RANBP17Q9H2T7 1088 aaKnown RBP25.39■■□□□ 1.66
CLN3-207ENST00000395653 ZNF536O15090 1300 aa25.39■■□□□ 1.66
CLN3-207ENST00000395653 HOXC6P09630 235 aa25.38■■□□□ 1.65
CLN3-207ENST00000395653 PARP1P09874 1014 aaKnown RBP25.38■■□□□ 1.65
CLN3-207ENST00000395653 GOLGA8HP0CJ92 632 aa25.38■■□□□ 1.65
CLN3-207ENST00000395653 FCER1AP12319 257 aa25.38■■□□□ 1.65
CLN3-207ENST00000395653 COL9A3Q14050 684 aaPredicted RBP25.38■■□□□ 1.65
CLN3-207ENST00000395653 TRMT44Q8IYL2 757 aaKnown RBP25.38■■□□□ 1.65
CLN3-207ENST00000395653 SENP2Q9HC62 589 aa25.38■■□□□ 1.65
CLN3-207ENST00000395653 RIPK3Q9Y572 518 aa25.38■■□□□ 1.65
CLN3-207ENST00000395653 WDR19Q8NEZ3 1342 aa25.38■■□□□ 1.65
CLN3-207ENST00000395653 CAPN15O75808 1086 aa25.37■■□□□ 1.65
CLN3-207ENST00000395653 ADORA2AP29274 412 aa25.37■■□□□ 1.65
CLN3-207ENST00000395653 UBXN2AP68543 259 aa25.37■■□□□ 1.65
CLN3-207ENST00000395653 ADCK5Q3MIX3 580 aa25.37■■□□□ 1.65
CLN3-207ENST00000395653 TMTC2Q8N394 836 aa25.37■■□□□ 1.65
CLN3-207ENST00000395653 LY9Q9HBG7 655 aa25.37■■□□□ 1.65
CLN3-207ENST00000395653 BIN2Q9UBW5 565 aaPredicted RBP25.37■■□□□ 1.65
CLN3-207ENST00000395653 SH2B2O14492 632 aaPredicted RBP25.37■■□□□ 1.65
CLN3-207ENST00000395653 HMGCRP04035 888 aa25.37■■□□□ 1.65
CLN3-207ENST00000395653 TROAPQ12815 778 aa25.37■■□□□ 1.65
CLN3-207ENST00000395653 DHX30Q7L2E3 1194 aaKnown RBP eCLIP25.37■■□□□ 1.65
CLN3-207ENST00000395653 CHST13Q8NET6 341 aa25.37■■□□□ 1.65
CLN3-207ENST00000395653 USP26Q9BXU7 913 aa25.37■■□□□ 1.65
CLN3-207ENST00000395653 FBXO40Q9UH90 709 aa25.37■■□□□ 1.65
CLN3-207ENST00000395653 SNX14Q9Y5W7 946 aa25.37■■□□□ 1.65
CLN3-207ENST00000395653 ICAM1P05362 532 aa25.36■■□□□ 1.65
CLN3-207ENST00000395653 HMGB1P09429 215 aaKnown RBP25.36■■□□□ 1.65
CLN3-207ENST00000395653 LIFRP42702 1097 aa25.36■■□□□ 1.65
CLN3-207ENST00000395653 KCTD2Q14681 263 aa25.36■■□□□ 1.65
CLN3-207ENST00000395653 TKFCQ3LXA3 575 aa25.36■■□□□ 1.65
CLN3-207ENST00000395653 CCDC174Q6PII3 467 aa25.36■■□□□ 1.65
CLN3-207ENST00000395653 CATIPQ7Z7H3 387 aa25.36■■□□□ 1.65
CLN3-207ENST00000395653 DPP9Q86TI2 863 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms