RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 SLFN14P0C7P3 912 aa17.16■□□□□ 0.34
GPC3-202ENST00000394299 TRAPPC10P48553 1259 aa17.16■□□□□ 0.34
GPC3-202ENST00000394299 FANCCQ00597 558 aa17.16■□□□□ 0.34
GPC3-202ENST00000394299 STRIP1Q5VSL9 837 aa17.16■□□□□ 0.34
GPC3-202ENST00000394299 DEFB132Q7Z7B7 95 aa17.16■□□□□ 0.34
GPC3-202ENST00000394299 RRP36Q96EU6 259 aaKnown RBP17.16■□□□□ 0.34
GPC3-202ENST00000394299 BLZF1Q9H2G9 400 aa17.16■□□□□ 0.34
GPC3-202ENST00000394299 FAM198AQ9UFP1 575 aa17.16■□□□□ 0.34
GPC3-202ENST00000394299 IKBKBO14920 756 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 BMP15O95972 392 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 SLC16A2P36021 539 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 MYL5Q02045 173 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 MORC3Q14149 939 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 NT5DC1Q5TFE4 455 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 SH3BP5LQ7L8J4 393 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 LRRC8AQ8IWT6 810 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 ELOA2Q8IYF1 753 aaPredicted RBP17.15■□□□□ 0.34
GPC3-202ENST00000394299 SMYD4Q8IYR2 804 aaPredicted RBP17.15■□□□□ 0.34
GPC3-202ENST00000394299 ZDHHC15Q96MV8 337 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 TMEM260Q9NX78 707 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 STK32BQ9NY57 414 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 HOOK1Q9UJC3 728 aaKnown RBP17.15■□□□□ 0.34
GPC3-202ENST00000394299 YDJCA8MPS7 323 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 PLIN2Q99541 437 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 MTRQ99707 1265 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 LZTS2Q9BRK4 669 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 ZMYND12Q9H0C1 365 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 SPTLC3Q9NUV7 552 aa17.15■□□□□ 0.34
GPC3-202ENST00000394299 BIN2Q9UBW5 565 aaPredicted RBP17.15■□□□□ 0.34
GPC3-202ENST00000394299 RAD21O60216 631 aa17.14■□□□□ 0.33
GPC3-202ENST00000394299 COBLO75128 1261 aa17.14■□□□□ 0.33
GPC3-202ENST00000394299 JAKMIP3Q5VZ66 844 aa17.14■□□□□ 0.33
GPC3-202ENST00000394299 TMC6Q7Z403 805 aa17.14■□□□□ 0.33
GPC3-202ENST00000394299 SH3RF1Q7Z6J0 888 aa17.14■□□□□ 0.33
GPC3-202ENST00000394299 ZSCAN29Q8IWY8 852 aaPredicted RBP17.14■□□□□ 0.33
GPC3-202ENST00000394299 CCDC148Q8NFR7 591 aa17.14■□□□□ 0.33
GPC3-202ENST00000394299 CNKSR1Q969H4 720 aa17.14■□□□□ 0.33
GPC3-202ENST00000394299 TDRD3Q9H7E2 651 aaKnown RBP17.14■□□□□ 0.33
GPC3-202ENST00000394299 MORC2Q9Y6X9 1032 aaPredicted RBP17.14■□□□□ 0.33
GPC3-202ENST00000394299 KCTD1Q719H9 257 aa17.14■□□□□ 0.33
GPC3-202ENST00000394299 SPATA20Q8TB22 786 aa17.14■□□□□ 0.33
GPC3-202ENST00000394299 RIOX1Q9H6W3 641 aa17.14■□□□□ 0.33
GPC3-202ENST00000394299 SEC63Q9UGP8 760 aaKnown RBP17.14■□□□□ 0.33
GPC3-202ENST00000394299 TNS1Q9HBL0 1735 aaKnown RBP17.13■□□□□ 0.33
GPC3-202ENST00000394299 TTLL1O95922 423 aa17.13■□□□□ 0.33
GPC3-202ENST00000394299 CD44P16070 742 aaKnown RBP17.13■□□□□ 0.33
GPC3-202ENST00000394299 KARSQ15046 597 aaKnown RBP17.13■□□□□ 0.33
GPC3-202ENST00000394299 E2F4Q16254 413 aa17.13■□□□□ 0.33
GPC3-202ENST00000394299 LETM2Q2VYF4 491 aa17.13■□□□□ 0.33
GPC3-202ENST00000394299 DAGLBQ8NCG7 672 aa17.13■□□□□ 0.33
GPC3-202ENST00000394299 HLA-DOAP06340 250 aa17.13■□□□□ 0.33
GPC3-202ENST00000394299 KANK3Q6NY19 840 aa17.13■□□□□ 0.33
GPC3-202ENST00000394299 FOCADQ5VW36 1801 aa17.12■□□□□ 0.33
GPC3-202ENST00000394299 TMEM232C9JQI7 657 aa17.12■□□□□ 0.33
GPC3-202ENST00000394299 SERPINC1P01008 464 aa17.12■□□□□ 0.33
GPC3-202ENST00000394299 STX17P56962 302 aa17.12■□□□□ 0.33
GPC3-202ENST00000394299 TPM4P67936 248 aa17.12■□□□□ 0.33
GPC3-202ENST00000394299 DPYDQ12882 1025 aa17.12■□□□□ 0.33
GPC3-202ENST00000394299 KLHL10Q6JEL2 608 aa17.12■□□□□ 0.33
GPC3-202ENST00000394299 PRMT6Q96LA8 375 aaPredicted RBP17.12■□□□□ 0.33
GPC3-202ENST00000394299 SWAP70Q9UH65 585 aa17.12■□□□□ 0.33
GPC3-202ENST00000394299 PPIP5K2O43314 1243 aa17.11■□□□□ 0.33
GPC3-202ENST00000394299 UBASH3AP57075 661 aa17.11■□□□□ 0.33
GPC3-202ENST00000394299 CUL4BQ13620 913 aa17.11■□□□□ 0.33
GPC3-202ENST00000394299 SAMSN1Q9NSI8 373 aaKnown RBP17.11■□□□□ 0.33
GPC3-202ENST00000394299 PLIN4Q96Q06 1357 aa17.11■□□□□ 0.33
GPC3-202ENST00000394299 CCNT1O60563 726 aaKnown RBP17.11■□□□□ 0.33
GPC3-202ENST00000394299 PPP1R11O60927 126 aaPredicted RBP17.11■□□□□ 0.33
GPC3-202ENST00000394299 SNHG28P0DPA3 235 aa17.11■□□□□ 0.33
GPC3-202ENST00000394299 PDXDC2PQ6P474 469 aa17.11■□□□□ 0.33
GPC3-202ENST00000394299 ADGRF4Q8IZF3 695 aa17.11■□□□□ 0.33
GPC3-202ENST00000394299 JMJD4Q9H9V9 463 aa17.11■□□□□ 0.33
GPC3-202ENST00000394299 C6orf50Q9HD87 102 aa17.11■□□□□ 0.33
GPC3-202ENST00000394299 NFE2L3Q9Y4A8 694 aa17.11■□□□□ 0.33
GPC3-202ENST00000394299 SKILP12757 684 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 GOLGA8FQ08AF8 430 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 ZNF543Q08ER8 600 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 GOLGA8DPQ0D2H9 430 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 SOGA3Q5TF21 947 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 DTHD1Q6ZMT9 781 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 IQUBQ8NA54 791 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 MLKLQ8NB16 471 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 USP27XA6NNY8 438 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 USP17L10C9JJH3 530 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 GDF11O95390 407 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 JAG1P78504 1218 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 CCZ1BP86790 482 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 CCZ1P86791 482 aaPredicted RBP17.1■□□□□ 0.33
GPC3-202ENST00000394299 CCDC96Q2M329 555 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 CFAP100Q494V2 611 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 ARL6IP4Q66PJ3 421 aaKnown RBP17.1■□□□□ 0.33
GPC3-202ENST00000394299 GALNT17Q6IS24 598 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 ARMCX5Q6P1M9 558 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 TBCKQ8TEA7 893 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 LRRC15Q8TF66 581 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 QSER1Q2KHR3 1735 aa17.1■□□□□ 0.33
GPC3-202ENST00000394299 RAD17O75943 681 aa17.09■□□□□ 0.33
GPC3-202ENST00000394299 EEF2P13639 858 aaKnown RBP17.09■□□□□ 0.33
GPC3-202ENST00000394299 SIAH1Q8IUQ4 282 aa17.09■□□□□ 0.33
GPC3-202ENST00000394299 INTS13Q9NVM9 706 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms