RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 PHRF1Q9P1Y6 1649 aaKnown RBP11.67□□□□□ -0.54
COL6A3-205ENST00000392004 POTEB2H3BUK9 544 aa11.67□□□□□ -0.54
COL6A3-205ENST00000392004 SH2B2O14492 632 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-205ENST00000392004 NDUFB10O96000 172 aa11.67□□□□□ -0.54
COL6A3-205ENST00000392004 SCG2P13521 617 aa11.67□□□□□ -0.54
COL6A3-205ENST00000392004 OSBPP22059 807 aa11.67□□□□□ -0.54
COL6A3-205ENST00000392004 CALML4Q96GE6 196 aa11.67□□□□□ -0.54
COL6A3-205ENST00000392004 CLMNQ96JQ2 1002 aa11.67□□□□□ -0.54
COL6A3-205ENST00000392004 SCAND2PQ9GZW5 306 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-205ENST00000392004 TRPA1O75762 1119 aa11.67□□□□□ -0.54
COL6A3-205ENST00000392004 F13A1P00488 732 aa11.67□□□□□ -0.54
COL6A3-205ENST00000392004 CA8P35219 290 aa11.67□□□□□ -0.54
COL6A3-205ENST00000392004 ENOX2Q16206 610 aaKnown RBP11.67□□□□□ -0.54
COL6A3-205ENST00000392004 SYDE2Q5VT97 1194 aa11.67□□□□□ -0.54
COL6A3-205ENST00000392004 GLTPD2A6NH11 291 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 RASA1P20936 1047 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 USP14P54578 494 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 PPP1R16BQ96T49 567 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 POLD4Q9HCU8 107 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 MAPK8IP1Q9UQF2 711 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 SUGT1Q9Y2Z0 365 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 ALS2Q96Q42 1657 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 KIAA0100Q14667 2235 aaKnown RBP11.66□□□□□ -0.54
COL6A3-205ENST00000392004 TRAF1Q13077 416 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 ANKRD13CQ8N6S4 541 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 ZNF280CQ8ND82 737 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 NUP62CLQ9H1M0 184 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 MLXIPQ9HAP2 919 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 GCOM1H8Y6P7 765 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-205ENST00000392004 NRDCO43847 1150 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 VIL1P09327 827 aaKnown RBP11.66□□□□□ -0.54
COL6A3-205ENST00000392004 POLR2MP0CAP2 368 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 CYP2B6P20813 491 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 NONOQ15233 471 aaKnown RBP eCLIP11.66□□□□□ -0.54
COL6A3-205ENST00000392004 ANKRD13AQ8IZ07 590 aa11.66□□□□□ -0.54
COL6A3-205ENST00000392004 HERC5Q9UII4 1024 aaKnown RBP11.66□□□□□ -0.54
COL6A3-205ENST00000392004 SPTLC2O15270 562 aa11.65□□□□□ -0.54
COL6A3-205ENST00000392004 GPATCH4Q5T3I0 446 aaKnown RBP11.65□□□□□ -0.54
COL6A3-205ENST00000392004 DTHD1Q6ZMT9 781 aa11.65□□□□□ -0.54
COL6A3-205ENST00000392004 TTC16Q8NEE8 873 aa11.65□□□□□ -0.54
COL6A3-205ENST00000392004 STAG1Q8WVM7 1258 aa11.65□□□□□ -0.54
COL6A3-205ENST00000392004 FAM212AQ96EL1 285 aa11.65□□□□□ -0.54
COL6A3-205ENST00000392004 PEX10O60683 326 aa11.65□□□□□ -0.54
COL6A3-205ENST00000392004 GADD45BO75293 160 aaPredicted RBP11.65□□□□□ -0.54
COL6A3-205ENST00000392004 SMC2O95347 1197 aa11.65□□□□□ -0.54
COL6A3-205ENST00000392004 CDC27P30260 824 aa11.65□□□□□ -0.54
COL6A3-205ENST00000392004 CDCA5Q96FF9 252 aa11.65□□□□□ -0.54
COL6A3-205ENST00000392004 TM6SF1Q9BZW5 370 aa11.65□□□□□ -0.54
COL6A3-205ENST00000392004 GLI3P10071 1580 aa11.65□□□□□ -0.54
COL6A3-205ENST00000392004 ENTPD3O75355 529 aa11.65□□□□□ -0.54
COL6A3-205ENST00000392004 C17orf53Q8N3J3 647 aaPredicted RBP11.65□□□□□ -0.54
COL6A3-205ENST00000392004 MTMR4Q9NYA4 1195 aa11.65□□□□□ -0.54
COL6A3-205ENST00000392004 CPA4Q9UI42 421 aa11.65□□□□□ -0.54
COL6A3-205ENST00000392004 PDE4DQ08499 809 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 KRT79Q5XKE5 535 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 WWC2Q6AWC2 1192 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 GIMAP6Q6P9H5 292 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 TPH2Q8IWU9 490 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 CYP2C8P10632 490 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 STAT6P42226 847 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 PTGER2P43116 358 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 CUL4AQ13619 759 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 NEDD1Q8NHV4 660 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 OPTNQ96CV9 577 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 ATG4CQ96DT6 458 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 BICD1Q96G01 975 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 SUGCTQ9HAC7 445 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 TBC1D7Q9P0N9 293 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 MRPL11Q9Y3B7 192 aaKnown RBP11.64□□□□□ -0.55
COL6A3-205ENST00000392004 MRVI1Q9Y6F6 885 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 TNPO2O14787 897 aaKnown RBP11.64□□□□□ -0.55
COL6A3-205ENST00000392004 CCNA1P78396 465 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 BLIDQ8IZY5 108 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 ANKRD20A12PQ8NF67 263 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 EEF2KMTQ96G04 330 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 TRPM3Q9HCF6 1732 aaPredicted RBP11.64□□□□□ -0.55
COL6A3-205ENST00000392004 FAM170AA1A519 330 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 TECP42680 631 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 SYKP43405 635 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 TTC38Q5R3I4 469 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 TCERG1LQ5VWI1 586 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 ZNF771Q7L3S4 317 aaPredicted RBP11.64□□□□□ -0.55
COL6A3-205ENST00000392004 SYCP3Q8IZU3 236 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 SPC24Q8NBT2 197 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 ZNF274Q96GC6 653 aaPredicted RBP11.64□□□□□ -0.55
COL6A3-205ENST00000392004 TAF1DQ9H5J8 278 aaPredicted RBP11.64□□□□□ -0.55
COL6A3-205ENST00000392004 RNF146Q9NTX7 359 aa11.64□□□□□ -0.55
COL6A3-205ENST00000392004 PXDNLA1KZ92 1463 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 SPDYE4A6NLX3 237 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 B4DLN1 442 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 KIF20AO95235 890 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 PPP4R3AQ6IN85 833 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 NLRX1Q86UT6 975 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 DGKHQ86XP1 1220 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 METTL13Q8N6R0 699 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 DPF2Q92785 391 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 ZNF668Q96K58 619 aaPredicted RBP11.63□□□□□ -0.55
COL6A3-205ENST00000392004 SH2D3AQ9BRG2 576 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 DACT1Q9NYF0 836 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 FAM198AQ9UFP1 575 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms