RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 AGPSO00116 658 aa20.76■□□□□ 0.91
CCDC3-201ENST00000378825 ATP2C1P98194 919 aaPredicted RBP20.76■□□□□ 0.91
CCDC3-201ENST00000378825 SAR1BQ9Y6B6 198 aa20.76■□□□□ 0.91
CCDC3-201ENST00000378825 C2orf54Q08AI8 447 aa20.75■□□□□ 0.91
CCDC3-201ENST00000378825 FKBP15Q5T1M5 1219 aa20.75■□□□□ 0.91
CCDC3-201ENST00000378825 SMCR8Q8TEV9 937 aaPredicted RBP20.75■□□□□ 0.91
CCDC3-201ENST00000378825 MED4Q9NPJ6 270 aa20.75■□□□□ 0.91
CCDC3-201ENST00000378825 MYO1AQ9UBC5 1043 aa20.75■□□□□ 0.91
CCDC3-201ENST00000378825 ABCF2Q9UG63 623 aa20.75■□□□□ 0.91
CCDC3-201ENST00000378825 RPN1P04843 607 aaKnown RBP20.75■□□□□ 0.91
CCDC3-201ENST00000378825 PSMD14O00487 310 aa20.74■□□□□ 0.91
CCDC3-201ENST00000378825 CYP7A1P22680 504 aa20.74■□□□□ 0.91
CCDC3-201ENST00000378825 MAGEA9P43362 315 aa20.74■□□□□ 0.91
CCDC3-201ENST00000378825 CT47A1Q5JQC4 288 aaPredicted RBP20.74■□□□□ 0.91
CCDC3-201ENST00000378825 TTC19Q6DKK2 380 aaPredicted RBP20.74■□□□□ 0.91
CCDC3-201ENST00000378825 ZNF34Q8IZ26 560 aa20.74■□□□□ 0.91
CCDC3-201ENST00000378825 OR8K1Q8NGG5 319 aa20.74■□□□□ 0.91
CCDC3-201ENST00000378825 HDAC7Q8WUI4 952 aa20.74■□□□□ 0.91
CCDC3-201ENST00000378825 TIAM2Q8IVF5 1701 aa20.74■□□□□ 0.91
CCDC3-201ENST00000378825 MACROD2A1Z1Q3 448 aa20.74■□□□□ 0.91
CCDC3-201ENST00000378825 IL6STP40189 918 aaPredicted RBP20.74■□□□□ 0.91
CCDC3-201ENST00000378825 MB21D1Q8N884 522 aa20.74■□□□□ 0.91
CCDC3-201ENST00000378825 RASGRP4Q8TDF6 673 aa20.74■□□□□ 0.91
CCDC3-201ENST00000378825 COG1Q8WTW3 980 aa20.74■□□□□ 0.91
CCDC3-201ENST00000378825 JAKMIP2Q96AA8 810 aa20.74■□□□□ 0.91
CCDC3-201ENST00000378825 MYH13Q9UKX3 1938 aa20.74■□□□□ 0.91
CCDC3-201ENST00000378825 SLIT2O94813 1529 aa20.73■□□□□ 0.91
CCDC3-201ENST00000378825 SLC5A1P13866 664 aa20.73■□□□□ 0.91
CCDC3-201ENST00000378825 DYNLL1P63167 89 aaKnown RBP20.73■□□□□ 0.91
CCDC3-201ENST00000378825 STIM1Q13586 685 aa20.73■□□□□ 0.91
CCDC3-201ENST00000378825 TMTC2Q8N394 836 aa20.73■□□□□ 0.91
CCDC3-201ENST00000378825 SRBD1Q8N5C6 995 aaKnown RBP20.73■□□□□ 0.91
CCDC3-201ENST00000378825 SMARCAL1Q9NZC9 954 aa20.73■□□□□ 0.91
CCDC3-201ENST00000378825 LUC7L2Q9Y383 392 aaKnown RBP20.73■□□□□ 0.91
CCDC3-201ENST00000378825 B4DLN1 442 aa20.73■□□□□ 0.91
CCDC3-201ENST00000378825 XBP1P17861 261 aa20.73■□□□□ 0.91
CCDC3-201ENST00000378825 ATP6V1AP38606 617 aa20.73■□□□□ 0.91
CCDC3-201ENST00000378825 AARSP49588 968 aaKnown RBP eCLIP20.73■□□□□ 0.91
CCDC3-201ENST00000378825 CORO7P57737 925 aa20.73■□□□□ 0.91
CCDC3-201ENST00000378825 IFIT1BQ5T764 474 aaKnown RBP20.73■□□□□ 0.91
CCDC3-201ENST00000378825 ZNF658Q5TYW1 1059 aaPredicted RBP20.73■□□□□ 0.91
CCDC3-201ENST00000378825 ZSCAN10Q96SZ4 725 aaPredicted RBP20.73■□□□□ 0.91
CCDC3-201ENST00000378825 SELENOOQ9BVL4 669 aa20.73■□□□□ 0.91
CCDC3-201ENST00000378825 DISP2A7MBM2 1401 aa20.73■□□□□ 0.91
CCDC3-201ENST00000378825 RASSF10A6NK89 507 aa20.72■□□□□ 0.91
CCDC3-201ENST00000378825 PRPF3O43395 683 aaKnown RBP20.72■□□□□ 0.91
CCDC3-201ENST00000378825 GTPBP6O43824 516 aaPredicted RBP20.72■□□□□ 0.91
CCDC3-201ENST00000378825 TROAPQ12815 778 aa20.72■□□□□ 0.91
CCDC3-201ENST00000378825 KRT26Q7Z3Y9 468 aa20.72■□□□□ 0.91
CCDC3-201ENST00000378825 KIAA1328Q86T90 577 aa20.72■□□□□ 0.91
CCDC3-201ENST00000378825 RRP36Q96EU6 259 aaKnown RBP20.72■□□□□ 0.91
CCDC3-201ENST00000378825 POLD4Q9HCU8 107 aa20.72■□□□□ 0.91
CCDC3-201ENST00000378825 SLC4A8Q2Y0W8 1093 aa20.72■□□□□ 0.91
CCDC3-201ENST00000378825 TTC31Q49AM3 519 aaPredicted RBP20.72■□□□□ 0.91
CCDC3-201ENST00000378825 INTS5Q6P9B9 1019 aaKnown RBP20.72■□□□□ 0.91
CCDC3-201ENST00000378825 LRRC15Q8TF66 581 aa20.72■□□□□ 0.91
CCDC3-201ENST00000378825 ESR2Q92731 530 aa20.72■□□□□ 0.91
CCDC3-201ENST00000378825 DRC1Q96MC2 740 aa20.72■□□□□ 0.91
CCDC3-201ENST00000378825 PSMB7Q99436 277 aa20.72■□□□□ 0.91
CCDC3-201ENST00000378825 KAT14Q9H8E8 782 aa20.72■□□□□ 0.91
CCDC3-201ENST00000378825 BAZ2AQ9UIF9 1905 aaKnown RBP20.71■□□□□ 0.91
CCDC3-201ENST00000378825 CRKLP46109 303 aaKnown RBP20.71■□□□□ 0.91
CCDC3-201ENST00000378825 CTR9Q6PD62 1173 aa20.71■□□□□ 0.91
CCDC3-201ENST00000378825 HAUS4Q9H6D7 363 aa20.71■□□□□ 0.91
CCDC3-201ENST00000378825 PNPLA7Q6ZV29 1317 aa20.71■□□□□ 0.91
CCDC3-201ENST00000378825 ERVV-1B6SEH8 477 aa20.71■□□□□ 0.91
CCDC3-201ENST00000378825 PPFIA4O75335 1185 aa20.71■□□□□ 0.91
CCDC3-201ENST00000378825 PLEKP08567 350 aaPredicted RBP20.71■□□□□ 0.91
CCDC3-201ENST00000378825 CAGE1Q8TC20 777 aa20.71■□□□□ 0.91
CCDC3-201ENST00000378825 ZNF507Q8TCN5 953 aa20.71■□□□□ 0.91
CCDC3-201ENST00000378825 SMARCC1Q92922 1105 aaPredicted RBP20.71■□□□□ 0.91
CCDC3-201ENST00000378825 DNAJC7Q99615 494 aa20.71■□□□□ 0.91
CCDC3-201ENST00000378825 EFCC1Q9HA90 598 aa20.71■□□□□ 0.91
CCDC3-201ENST00000378825 EHD2Q9NZN4 543 aa20.71■□□□□ 0.91
CCDC3-201ENST00000378825 MKRN1Q9UHC7 482 aaKnown RBP20.71■□□□□ 0.91
CCDC3-201ENST00000378825 MYH3P11055 1940 aa20.7■□□□□ 0.91
CCDC3-201ENST00000378825 PAPD7Q5XG87 772 aaKnown RBP20.7■□□□□ 0.9
CCDC3-201ENST00000378825 GOLGA6L1Q8N7Z2 621 aa20.7■□□□□ 0.9
CCDC3-201ENST00000378825 ANKRD20A12PQ8NF67 263 aa20.7■□□□□ 0.9
CCDC3-201ENST00000378825 ACBD3Q9H3P7 528 aa20.7■□□□□ 0.9
CCDC3-201ENST00000378825 RNF41Q9H4P4 317 aaPredicted RBP20.7■□□□□ 0.9
CCDC3-201ENST00000378825 LGALS16A8MUM7 142 aa20.7■□□□□ 0.9
CCDC3-201ENST00000378825 EIF5P55010 431 aaKnown RBP20.7■□□□□ 0.9
CCDC3-201ENST00000378825 TUBB4BP68371 445 aa20.7■□□□□ 0.9
CCDC3-201ENST00000378825 SPAG1Q07617 926 aa20.7■□□□□ 0.9
CCDC3-201ENST00000378825 DNAJC21Q5F1R6 531 aaKnown RBP20.7■□□□□ 0.9
CCDC3-201ENST00000378825 JADE2Q9NQC1 790 aa20.7■□□□□ 0.9
CCDC3-201ENST00000378825 FAM205AQ6ZU69 1335 aa20.7■□□□□ 0.9
CCDC3-201ENST00000378825 CNTNAP5Q8WYK1 1306 aa20.7■□□□□ 0.9
CCDC3-201ENST00000378825 NUP98P52948 1817 aa20.69■□□□□ 0.9
CCDC3-201ENST00000378825 NLRP5P59047 1200 aa20.69■□□□□ 0.9
CCDC3-201ENST00000378825 NAALADL2Q58DX5 795 aa20.69■□□□□ 0.9
CCDC3-201ENST00000378825 FAM47AQ5JRC9 791 aa20.69■□□□□ 0.9
CCDC3-201ENST00000378825 SMIM5Q71RC9 77 aa20.69■□□□□ 0.9
CCDC3-201ENST00000378825 CATIPQ7Z7H3 387 aa20.69■□□□□ 0.9
CCDC3-201ENST00000378825 VIPAS39Q9H9C1 493 aa20.69■□□□□ 0.9
CCDC3-201ENST00000378825 MROH5Q6ZUA9 1318 aa20.69■□□□□ 0.9
CCDC3-201ENST00000378825 CCT5P48643 541 aa20.69■□□□□ 0.9
CCDC3-201ENST00000378825 KCNQ4P56696 695 aa20.69■□□□□ 0.9
CCDC3-201ENST00000378825 SLC7A5Q01650 507 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms