RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 PCNTO95613 3336 aa17.83■□□□□ 0.44
CCDC40-202ENST00000374876 TBC1D12O60347 775 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 ZNF202O95125 648 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 U2AF2P26368 475 aaKnown RBP eCLIP17.82■□□□□ 0.444e-6■■□□□ 13.2
CCDC40-202ENST00000374876 VGLL4Q14135 290 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 RRP1BQ14684 758 aaKnown RBP17.82■□□□□ 0.44
CCDC40-202ENST00000374876 SLC10A4Q96EP9 437 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 ELP3Q9H9T3 547 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 KIAA1468Q9P260 1216 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 ZNF112Q9UJU3 913 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 PYCARDQ9ULZ3 195 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 NAV1Q8NEY1 1877 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 SIPA1L1O43166 1804 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 A0A087WWV3 80 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 UQCRHLA0A096LP55 91 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 CCDC196A0A1B0GTZ2 297 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 PPP6R2O75170 966 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 UQCRHP07919 91 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 PFKFB1P16118 471 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 CDC25BP30305 580 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 MKRN3Q13064 507 aaKnown RBP17.82■□□□□ 0.44
CCDC40-202ENST00000374876 DYNLL2Q96FJ2 89 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 HHIPL1Q96JK4 782 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 CAPNS2Q96L46 248 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.82■□□□□ 0.44
CCDC40-202ENST00000374876 TRIM34Q9BYJ4 488 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 SERPINB13Q9UIV8 391 aa17.82■□□□□ 0.44
CCDC40-202ENST00000374876 SLC3A2P08195 630 aaKnown RBP17.81■□□□□ 0.44
CCDC40-202ENST00000374876 SAFBQ15424 915 aaKnown RBP eCLIP17.81■□□□□ 0.44
CCDC40-202ENST00000374876 C12orf60Q5U649 245 aa17.81■□□□□ 0.44
CCDC40-202ENST00000374876 DHX40Q8IX18 779 aaKnown RBP17.81■□□□□ 0.44
CCDC40-202ENST00000374876 CNKSR2Q8WXI2 1034 aa17.81■□□□□ 0.44
CCDC40-202ENST00000374876 ESR2Q92731 530 aa17.81■□□□□ 0.44
CCDC40-202ENST00000374876 HERC5Q9UII4 1024 aaKnown RBP17.81■□□□□ 0.44
CCDC40-202ENST00000374876 AOC2O75106 756 aa17.81■□□□□ 0.44
CCDC40-202ENST00000374876 RCAN1P53805 252 aa17.81■□□□□ 0.44
CCDC40-202ENST00000374876 METTL16Q86W50 562 aaKnown RBP17.81■□□□□ 0.44
CCDC40-202ENST00000374876 ZIC5Q96T25 663 aa17.81■□□□□ 0.44
CCDC40-202ENST00000374876 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.81■□□□□ 0.44
CCDC40-202ENST00000374876 NRBP1Q9UHY1 535 aa17.81■□□□□ 0.44
CCDC40-202ENST00000374876 ANAPC4Q9UJX5 808 aa17.81■□□□□ 0.44
CCDC40-202ENST00000374876 CSADQ9Y600 493 aa17.81■□□□□ 0.44
CCDC40-202ENST00000374876 FAM155AB1AL88 458 aaPredicted RBP17.8■□□□□ 0.44
CCDC40-202ENST00000374876 RASAL3Q86YV0 1011 aa17.8■□□□□ 0.44
CCDC40-202ENST00000374876 SLC44A5Q8NCS7 719 aa17.8■□□□□ 0.44
CCDC40-202ENST00000374876 NUP133Q8WUM0 1156 aa17.8■□□□□ 0.44
CCDC40-202ENST00000374876 MRFAP1L1Q96HT8 127 aa17.8■□□□□ 0.44
CCDC40-202ENST00000374876 SNCAIPQ9Y6H5 919 aa17.8■□□□□ 0.44
CCDC40-202ENST00000374876 DDX60LQ5H9U9 1706 aaKnown RBP17.8■□□□□ 0.44
CCDC40-202ENST00000374876 OTOFQ9HC10 1997 aa17.8■□□□□ 0.44
CCDC40-202ENST00000374876 PTPAQ15257 358 aa17.79■□□□□ 0.44
CCDC40-202ENST00000374876 SHROOM1Q2M3G4 852 aaPredicted RBP17.79■□□□□ 0.44
CCDC40-202ENST00000374876 AMOTL1Q8IY63 956 aa17.79■□□□□ 0.44
CCDC40-202ENST00000374876 ZNF654Q8IZM8 581 aa17.79■□□□□ 0.44
CCDC40-202ENST00000374876 AOPEPQ8N6M6 819 aa17.79■□□□□ 0.44
CCDC40-202ENST00000374876 MAP3K14Q99558 947 aa17.79■□□□□ 0.44
CCDC40-202ENST00000374876 EHD4Q9H223 541 aa17.79■□□□□ 0.44
CCDC40-202ENST00000374876 DEXIO95424 95 aa17.79■□□□□ 0.44
CCDC40-202ENST00000374876 SYKP43405 635 aa17.79■□□□□ 0.44
CCDC40-202ENST00000374876 GABPAQ06546 454 aa17.79■□□□□ 0.44
CCDC40-202ENST00000374876 NOSTRINQ8IVI9 506 aa17.79■□□□□ 0.44
CCDC40-202ENST00000374876 FANCBQ8NB91 859 aa17.79■□□□□ 0.44
CCDC40-202ENST00000374876 CCDC102AQ96A19 550 aa17.79■□□□□ 0.44
CCDC40-202ENST00000374876 ARPP21Q9UBL0 812 aaPredicted RBP17.79■□□□□ 0.44
CCDC40-202ENST00000374876 GDF11O95390 407 aa17.78■□□□□ 0.44
CCDC40-202ENST00000374876 MMP1P03956 469 aa17.78■□□□□ 0.44
CCDC40-202ENST00000374876 GUCY1A2P33402 732 aa17.78■□□□□ 0.44
CCDC40-202ENST00000374876 JAG1P78504 1218 aa17.78■□□□□ 0.44
CCDC40-202ENST00000374876 SBK1Q52WX2 424 aa17.78■□□□□ 0.44
CCDC40-202ENST00000374876 CCDC84Q86UT8 332 aaPredicted RBP17.78■□□□□ 0.44
CCDC40-202ENST00000374876 CCDC82Q8N4S0 544 aa17.78■□□□□ 0.44
CCDC40-202ENST00000374876 TIGD1Q96MW7 591 aa17.78■□□□□ 0.44
CCDC40-202ENST00000374876 TNKSO95271 1327 aa17.78■□□□□ 0.44
CCDC40-202ENST00000374876 UNCXA6NJT0 531 aa17.77■□□□□ 0.44
CCDC40-202ENST00000374876 CTNND1O60716 968 aaKnown RBP17.77■□□□□ 0.44
CCDC40-202ENST00000374876 SLC10A3P09131 477 aa17.77■□□□□ 0.44
CCDC40-202ENST00000374876 SHMT1P34896 483 aa17.77■□□□□ 0.44
CCDC40-202ENST00000374876 GJA5P36382 358 aa17.77■□□□□ 0.44
CCDC40-202ENST00000374876 CAP2P40123 477 aa17.77■□□□□ 0.44
CCDC40-202ENST00000374876 ECE1P42892 770 aa17.77■□□□□ 0.44
CCDC40-202ENST00000374876 DPCR1Q3MIW9 517 aa17.77■□□□□ 0.44
CCDC40-202ENST00000374876 DIS3L2Q8IYB7 885 aaKnown RBP17.77■□□□□ 0.44
CCDC40-202ENST00000374876 OPTNQ96CV9 577 aa17.77■□□□□ 0.44
CCDC40-202ENST00000374876 PRIMPOLQ96LW4 560 aa17.77■□□□□ 0.44
CCDC40-202ENST00000374876 BPIFA3Q9BQP9 254 aa17.77■□□□□ 0.44
CCDC40-202ENST00000374876 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.77■□□□□ 0.44
CCDC40-202ENST00000374876 LRMPQ12912 555 aa17.77■□□□□ 0.43
CCDC40-202ENST00000374876 SPRYD7Q5W111 196 aa17.77■□□□□ 0.43
CCDC40-202ENST00000374876 TATDN1Q6P1N9 297 aa17.77■□□□□ 0.43
CCDC40-202ENST00000374876 SHC4Q6S5L8 630 aa17.77■□□□□ 0.43
CCDC40-202ENST00000374876 NBPF11Q86T75 865 aa17.77■□□□□ 0.43
CCDC40-202ENST00000374876 SCYL3Q8IZE3 742 aa17.77■□□□□ 0.43
CCDC40-202ENST00000374876 CMTR1Q8N1G2 835 aaKnown RBP17.77■□□□□ 0.43
CCDC40-202ENST00000374876 OTUD5Q96G74 571 aa17.77■□□□□ 0.43
CCDC40-202ENST00000374876 BTBD18B2RXH4 712 aa17.76■□□□□ 0.43
CCDC40-202ENST00000374876 BIN1O00499 593 aa17.76■□□□□ 0.43
CCDC40-202ENST00000374876 CUTAO60888 179 aa17.76■□□□□ 0.43
CCDC40-202ENST00000374876 CDK8P49336 464 aa17.76■□□□□ 0.43
CCDC40-202ENST00000374876 NLRP12P59046 1061 aa17.76■□□□□ 0.43
CCDC40-202ENST00000374876 PPP2R5BQ15173 497 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms