RNA–Protein interactions for RNA: ENST00000374481.7

CD28-202, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 4,526 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-202ENST00000374481 HS2ST1Q7LGA3 356 aa11.28□□□□□ -0.6
CD28-202ENST00000374481 MYLK4Q86YV6 388 aaPredicted RBP11.28□□□□□ -0.6
CD28-202ENST00000374481 DIS3L2Q8IYB7 885 aaKnown RBP11.28□□□□□ -0.6
CD28-202ENST00000374481 SCYL3Q8IZE3 742 aa11.28□□□□□ -0.6
CD28-202ENST00000374481 PPP1R14CQ8TAE6 165 aa11.28□□□□□ -0.6
CD28-202ENST00000374481 DBF4Q9UBU7 674 aaPredicted RBP11.28□□□□□ -0.6
CD28-202ENST00000374481 A0A0D9SFI3 127 aa11.28□□□□□ -0.6
CD28-202ENST00000374481 BTBD11A6QL63 1104 aa11.28□□□□□ -0.6
CD28-202ENST00000374481 MYBL1P10243 752 aa11.28□□□□□ -0.6
CD28-202ENST00000374481 ZFXP17010 805 aaPredicted RBP11.28□□□□□ -0.6
CD28-202ENST00000374481 MSH2P43246 934 aa11.28□□□□□ -0.6
CD28-202ENST00000374481 DNM2P50570 870 aa11.28□□□□□ -0.6
CD28-202ENST00000374481 RAB21Q9UL25 225 aa11.28□□□□□ -0.6
CD28-202ENST00000374481 IKBKGQ9Y6K9 419 aa11.28□□□□□ -0.6
CD28-202ENST00000374481 A2MP01023 1474 aa11.27□□□□□ -0.6
CD28-202ENST00000374481 MAGOHP61326 146 aaKnown RBP11.27□□□□□ -0.6
CD28-202ENST00000374481 DHX9Q08211 1270 aaKnown RBP11.27□□□□□ -0.6
CD28-202ENST00000374481 NME8Q8N427 588 aa11.27□□□□□ -0.6
CD28-202ENST00000374481 LRRC8CQ8TDW0 803 aa11.27□□□□□ -0.6
CD28-202ENST00000374481 MAGOHBQ96A72 148 aaKnown RBP11.27□□□□□ -0.6
CD28-202ENST00000374481 STAMBPL1Q96FJ0 436 aa11.27□□□□□ -0.6
CD28-202ENST00000374481 RNPC3Q96LT9 517 aaKnown RBP11.27□□□□□ -0.6
CD28-202ENST00000374481 FAM207AQ9NSI2 230 aaPredicted RBP11.27□□□□□ -0.6
CD28-202ENST00000374481 RNF14Q9UBS8 474 aa11.27□□□□□ -0.6
CD28-202ENST00000374481 ATP8A1Q9Y2Q0 1164 aa11.27□□□□□ -0.6
CD28-202ENST00000374481 NLRP6P59044 892 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 DDR1Q08345 913 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 PLEKHO1Q53GL0 409 aaPredicted RBP11.27□□□□□ -0.61
CD28-202ENST00000374481 TRIM65Q6PJ69 517 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 SMC1BQ8NDV3 1235 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 ZNF274Q96GC6 653 aaPredicted RBP11.27□□□□□ -0.61
CD28-202ENST00000374481 CALML4Q96GE6 196 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 HIC2Q96JB3 615 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 MIS12Q9H081 205 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 ECT2Q9H8V3 914 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 ANO9A1A5B4 782 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 ABCD1P33897 745 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 GLE1Q53GS7 698 aaKnown RBP11.27□□□□□ -0.61
CD28-202ENST00000374481 NUGGCQ68CJ6 796 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 BICDL1Q6ZP65 573 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 RRAGAQ7L523 313 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 A1CFQ9NQ94 594 aaKnown RBP11.27□□□□□ -0.61
CD28-202ENST00000374481 MAN1B1Q9UKM7 699 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 CYP27A1Q02318 531 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 EHHADHQ08426 723 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 PPP4R3AQ6IN85 833 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 NUDCD1Q96RS6 583 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 ETNK1Q9HBU6 452 aa11.27□□□□□ -0.61
CD28-202ENST00000374481 ESYT3A0FGR9 886 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 TPD52L2O43399 206 aaKnown RBP11.26□□□□□ -0.61
CD28-202ENST00000374481 ALDH1L1O75891 902 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 SCTRP47872 440 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 VPS41P49754 854 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 APLFQ8IW19 511 aaPredicted RBP11.26□□□□□ -0.61
CD28-202ENST00000374481 PDCD7Q8N8D1 485 aaKnown RBP11.26□□□□□ -0.61
CD28-202ENST00000374481 CCDC110Q8TBZ0 833 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 RRP36Q96EU6 259 aaKnown RBP11.26□□□□□ -0.61
CD28-202ENST00000374481 THEGQ9P2T0 379 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 MTUS1Q9ULD2 1270 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 SERPINB4P48594 390 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 PSMD7P51665 324 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 SLC44A4Q53GD3 710 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 PEX26Q7Z412 305 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 FUKQ8N0W3 1084 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 SSH3Q8TE77 659 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 EHD4Q9H223 541 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 LMNAP02545 664 aaKnown RBP11.26□□□□□ -0.61
CD28-202ENST00000374481 ATP1A1P05023 1023 aaKnown RBP11.26□□□□□ -0.61
CD28-202ENST00000374481 CCDC84Q86UT8 332 aaPredicted RBP11.26□□□□□ -0.61
CD28-202ENST00000374481 BLZF1Q9H2G9 400 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 STRN4Q9NRL3 753 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 C15orf41Q9Y2V0 281 aa11.26□□□□□ -0.61
CD28-202ENST00000374481 PHF20L1A8MW92 1017 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 TROVE2P10155 538 aaKnown RBP eCLIP11.25□□□□□ -0.61
CD28-202ENST00000374481 CNGA1P29973 690 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 RCN2Q14257 317 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 ZNF449Q6P9G9 518 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 AHCYL1O43865 530 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 NECTIN1Q15223 517 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 ZNF530Q6P9A1 599 aaPredicted RBP11.25□□□□□ -0.61
CD28-202ENST00000374481 TRIM74Q86UV6 250 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 TRIM73Q86UV7 250 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 TC2NQ8N9U0 490 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 LRRC1Q9BTT6 524 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 CNNM1Q9NRU3 951 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 LRWD1Q9UFC0 647 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 EIF4G3O43432 1585 aaKnown RBP11.25□□□□□ -0.61
CD28-202ENST00000374481 MINDY4BA8MYZ0 360 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 RNF8O76064 485 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 WTAPQ15007 396 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 RBM43Q6ZSC3 357 aaKnown RBP11.25□□□□□ -0.61
CD28-202ENST00000374481 PHKBQ93100 1093 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 PLEKHF1Q96S99 279 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 RIMS2Q9UQ26 1411 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 CCT8L1PA6NM43 557 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 CHL1O00533 1208 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 MOCS3O95396 460 aa11.25□□□□□ -0.61
CD28-202ENST00000374481 PARP1P09874 1014 aaKnown RBP11.25□□□□□ -0.61
CD28-202ENST00000374481 EIF3BP55884 814 aaKnown RBP11.25□□□□□ -0.61
CD28-202ENST00000374481 TRIM42Q8IWZ5 723 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms