RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 MB21D1Q8N884 522 aa18.42■□□□□ 0.54
SDC4-201ENST00000372733 OR8K1Q8NGG5 319 aa18.42■□□□□ 0.54
SDC4-201ENST00000372733 RMND1Q9NWS8 449 aa18.42■□□□□ 0.54
SDC4-201ENST00000372733 KAT6BQ8WYB5 2073 aa18.42■□□□□ 0.54
SDC4-201ENST00000372733 WTIPA6NIX2 430 aaPredicted RBP18.42■□□□□ 0.54
SDC4-201ENST00000372733 LGALS16A8MUM7 142 aa18.42■□□□□ 0.54
SDC4-201ENST00000372733 RNF40O75150 1001 aa18.42■□□□□ 0.54
SDC4-201ENST00000372733 TUBBP07437 444 aa18.42■□□□□ 0.54
SDC4-201ENST00000372733 CCDC122Q5T0U0 273 aa18.42■□□□□ 0.54
SDC4-201ENST00000372733 WDR59Q6PJI9 974 aa18.42■□□□□ 0.54
SDC4-201ENST00000372733 GDAP1L1Q96MZ0 367 aa18.42■□□□□ 0.54
SDC4-201ENST00000372733 MED4Q9NPJ6 270 aa18.42■□□□□ 0.54
SDC4-201ENST00000372733 LUC7L2Q9Y383 392 aaKnown RBP18.42■□□□□ 0.54
SDC4-201ENST00000372733 DDAH1O94760 285 aa18.41■□□□□ 0.54
SDC4-201ENST00000372733 IGHMBP2P38935 993 aaKnown RBP18.41■□□□□ 0.54
SDC4-201ENST00000372733 STAT6P42226 847 aa18.41■□□□□ 0.54
SDC4-201ENST00000372733 GYG1P46976 350 aa18.41■□□□□ 0.54
SDC4-201ENST00000372733 GSPT2Q8IYD1 628 aaKnown RBP18.41■□□□□ 0.54
SDC4-201ENST00000372733 DNAJC7Q99615 494 aa18.41■□□□□ 0.54
SDC4-201ENST00000372733 ACBD3Q9H3P7 528 aa18.41■□□□□ 0.54
SDC4-201ENST00000372733 HAUS4Q9H6D7 363 aa18.41■□□□□ 0.54
SDC4-201ENST00000372733 ZMYND10O75800 440 aa18.41■□□□□ 0.54
SDC4-201ENST00000372733 SCG2P13521 617 aa18.41■□□□□ 0.54
SDC4-201ENST00000372733 CTCFLQ8NI51 663 aaPredicted RBP18.41■□□□□ 0.54
SDC4-201ENST00000372733 PLEKHA4Q9H4M7 779 aa18.41■□□□□ 0.54
SDC4-201ENST00000372733 RSPH14Q9UHP6 348 aa18.41■□□□□ 0.54
SDC4-201ENST00000372733 COL4A1P02462 1669 aa18.41■□□□□ 0.54
SDC4-201ENST00000372733 BCL9O00512 1426 aa18.4■□□□□ 0.54
SDC4-201ENST00000372733 PP2D1A8MPX8 630 aa18.4■□□□□ 0.54
SDC4-201ENST00000372733 RPS6KA5O75582 802 aa18.4■□□□□ 0.54
SDC4-201ENST00000372733 CALM1P0DP23 149 aa18.4■□□□□ 0.54
SDC4-201ENST00000372733 CALM2P0DP24 149 aa18.4■□□□□ 0.54
SDC4-201ENST00000372733 CALM3P0DP25 149 aa18.4■□□□□ 0.54
SDC4-201ENST00000372733 IL6STP40189 918 aaPredicted RBP18.4■□□□□ 0.54
SDC4-201ENST00000372733 ADSSL1Q8N142 457 aa18.4■□□□□ 0.54
SDC4-201ENST00000372733 SAR1BQ9Y6B6 198 aa18.4■□□□□ 0.54
SDC4-201ENST00000372733 FAM205AQ6ZU69 1335 aa18.4■□□□□ 0.54
SDC4-201ENST00000372733 SYF2O95926 243 aaKnown RBP18.4■□□□□ 0.54
SDC4-201ENST00000372733 LRRC31Q6UY01 552 aa18.4■□□□□ 0.54
SDC4-201ENST00000372733 RASGRP4Q8TDF6 673 aa18.4■□□□□ 0.54
SDC4-201ENST00000372733 EEF2KMTQ96G04 330 aa18.4■□□□□ 0.54
SDC4-201ENST00000372733 PYM1Q9BRP8 204 aaKnown RBP18.4■□□□□ 0.54
SDC4-201ENST00000372733 HPCAL4Q9UM19 191 aa18.4■□□□□ 0.54
SDC4-201ENST00000372733 RCCD1A6NED2 376 aa18.39■□□□□ 0.54
SDC4-201ENST00000372733 H7C1D1 291 aa18.39■□□□□ 0.54
SDC4-201ENST00000372733 TRAPPC10P48553 1259 aa18.39■□□□□ 0.54
SDC4-201ENST00000372733 CCDC152Q4G0S7 254 aa18.39■□□□□ 0.54
SDC4-201ENST00000372733 FAM47AQ5JRC9 791 aa18.39■□□□□ 0.54
SDC4-201ENST00000372733 KIAA1328Q86T90 577 aa18.39■□□□□ 0.54
SDC4-201ENST00000372733 RIN2Q8WYP3 895 aaPredicted RBP18.39■□□□□ 0.54
SDC4-201ENST00000372733 GNL3LQ9NVN8 582 aaKnown RBP18.39■□□□□ 0.54
SDC4-201ENST00000372733 PDS5AQ29RF7 1337 aaKnown RBP18.39■□□□□ 0.53
SDC4-201ENST00000372733 CTR9Q6PD62 1173 aa18.39■□□□□ 0.53
SDC4-201ENST00000372733 ZNF507Q8TCN5 953 aa18.39■□□□□ 0.53
SDC4-201ENST00000372733 TRIM47Q96LD4 638 aa18.39■□□□□ 0.53
SDC4-201ENST00000372733 PLIN2Q99541 437 aa18.39■□□□□ 0.53
SDC4-201ENST00000372733 LACRTQ9GZZ8 138 aa18.39■□□□□ 0.53
SDC4-201ENST00000372733 B4DLN1 442 aa18.38■□□□□ 0.53
SDC4-201ENST00000372733 USP17L12C9JPN9 530 aa18.38■□□□□ 0.53
SDC4-201ENST00000372733 USP17L21D6R901 530 aa18.38■□□□□ 0.53
SDC4-201ENST00000372733 NAALADL2Q58DX5 795 aa18.38■□□□□ 0.53
SDC4-201ENST00000372733 RASSF8Q8NHQ8 419 aa18.38■□□□□ 0.53
SDC4-201ENST00000372733 ZNF384Q8TF68 577 aa18.38■□□□□ 0.53
SDC4-201ENST00000372733 JAKMIP2Q96AA8 810 aa18.38■□□□□ 0.53
SDC4-201ENST00000372733 DISC1Q9NRI5 854 aa18.38■□□□□ 0.53
SDC4-201ENST00000372733 CAPN11Q9UMQ6 739 aa18.38■□□□□ 0.53
SDC4-201ENST00000372733 ZC3H4Q9UPT8 1303 aaKnown RBP18.38■□□□□ 0.53
SDC4-201ENST00000372733 MYBL2P10244 700 aa18.38■□□□□ 0.53
SDC4-201ENST00000372733 AARSP49588 968 aaKnown RBP eCLIP18.38■□□□□ 0.53
SDC4-201ENST00000372733 KLK7P49862 253 aa18.38■□□□□ 0.53
SDC4-201ENST00000372733 PAPD7Q5XG87 772 aaKnown RBP18.38■□□□□ 0.53
SDC4-201ENST00000372733 C4orf32Q8N8J7 132 aa18.38■□□□□ 0.53
SDC4-201ENST00000372733 GPKOWQ92917 476 aaPredicted RBP eCLIP18.38■□□□□ 0.53
SDC4-201ENST00000372733 BRIP1Q9BX63 1249 aa18.38■□□□□ 0.53
SDC4-201ENST00000372733 AGPAT5Q9NUQ2 364 aa18.38■□□□□ 0.53
SDC4-201ENST00000372733 CACNA1SQ13698 1873 aa18.38■□□□□ 0.53
SDC4-201ENST00000372733 A0A1W2PQC6 194 aa18.37■□□□□ 0.53
SDC4-201ENST00000372733 ANKRD65E5RJM6 399 aa18.37■□□□□ 0.53
SDC4-201ENST00000372733 ZNF185O15231 689 aa18.37■□□□□ 0.53
SDC4-201ENST00000372733 PRPF6O94906 941 aaKnown RBP18.37■□□□□ 0.53
SDC4-201ENST00000372733 LONP1P36776 959 aaKnown RBP18.37■□□□□ 0.53
SDC4-201ENST00000372733 PFKFB3Q16875 520 aaPredicted RBP18.37■□□□□ 0.53
SDC4-201ENST00000372733 TSR1Q2NL82 804 aaKnown RBP18.37■□□□□ 0.53
SDC4-201ENST00000372733 AFAP1L1Q8TED9 768 aa18.37■□□□□ 0.53
SDC4-201ENST00000372733 VIPAS39Q9H9C1 493 aa18.37■□□□□ 0.53
SDC4-201ENST00000372733 ABCA3Q99758 1704 aa18.37■□□□□ 0.53
SDC4-201ENST00000372733 PDE2AO00408 941 aaPredicted RBP18.37■□□□□ 0.53
SDC4-201ENST00000372733 CAGE1Q8TC20 777 aa18.37■□□□□ 0.53
SDC4-201ENST00000372733 DNAJC5Q9H3Z4 198 aa18.37■□□□□ 0.53
SDC4-201ENST00000372733 ZNF804BA4D1E1 1349 aa18.37■□□□□ 0.53
SDC4-201ENST00000372733 DLEC1Q9Y238 1755 aa18.37■□□□□ 0.53
SDC4-201ENST00000372733 EEF1GP26641 437 aaKnown RBP18.36■□□□□ 0.53
SDC4-201ENST00000372733 MAP9Q49MG5 647 aa18.36■□□□□ 0.53
SDC4-201ENST00000372733 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.36■□□□□ 0.53
SDC4-201ENST00000372733 DUSP10Q9Y6W6 482 aa18.36■□□□□ 0.53
SDC4-201ENST00000372733 COL22A1Q8NFW1 1626 aaPredicted RBP18.36■□□□□ 0.53
SDC4-201ENST00000372733 ARL6IP4Q66PJ3 421 aaKnown RBP18.36■□□□□ 0.53
SDC4-201ENST00000372733 GOLGA6L1Q8N7Z2 621 aa18.36■□□□□ 0.53
SDC4-201ENST00000372733 COG1Q8WTW3 980 aa18.36■□□□□ 0.53
SDC4-201ENST00000372733 KLRC4O43908 158 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms