RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.19■□□□□ 0.18
LDB3-204ENST00000372066 CLIC4Q9Y696 253 aa16.19■□□□□ 0.18
LDB3-204ENST00000372066 SNCAIPQ9Y6H5 919 aa16.19■□□□□ 0.18
LDB3-204ENST00000372066 PPFIA3O75145 1194 aa16.18■□□□□ 0.18
LDB3-204ENST00000372066 DDAH1O94760 285 aa16.18■□□□□ 0.18
LDB3-204ENST00000372066 XBP1P17861 261 aa16.18■□□□□ 0.18
LDB3-204ENST00000372066 RXRAP19793 462 aa16.18■□□□□ 0.18
LDB3-204ENST00000372066 CMA1P23946 247 aa16.18■□□□□ 0.18
LDB3-204ENST00000372066 DCAF15Q66K64 600 aa16.18■□□□□ 0.18
LDB3-204ENST00000372066 CTR9Q6PD62 1173 aa16.18■□□□□ 0.18
LDB3-204ENST00000372066 MIGA2Q7L4E1 593 aa16.18■□□□□ 0.18
LDB3-204ENST00000372066 FOXP1Q9H334 677 aaPredicted RBP16.18■□□□□ 0.18
LDB3-204ENST00000372066 ANO10Q9NW15 660 aa16.18■□□□□ 0.18
LDB3-204ENST00000372066 IRF6O14896 467 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 MMP1P03956 469 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 LDHCP07864 332 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 EN2P19622 333 aaPredicted RBP16.17■□□□□ 0.18
LDB3-204ENST00000372066 ZNF165P49910 485 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 SNAPC2Q13487 334 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.17■□□□□ 0.18
LDB3-204ENST00000372066 CATIPQ7Z7H3 387 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 NBPF11Q86T75 865 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 CCDC144CPQ8IYA2 1237 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 CRACR2BQ8N4Y2 399 aaPredicted RBP16.17■□□□□ 0.18
LDB3-204ENST00000372066 TIGD1Q96MW7 591 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 MYL10Q9BUA6 226 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.17■□□□□ 0.18
LDB3-204ENST00000372066 TMEM106CQ9BVX2 250 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 CBX8Q9HC52 389 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 DCP1AQ9NPI6 582 aaPredicted RBP16.17■□□□□ 0.18
LDB3-204ENST00000372066 MORC2Q9Y6X9 1032 aaPredicted RBP16.17■□□□□ 0.18
LDB3-204ENST00000372066 FOCADQ5VW36 1801 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 ROBO3Q96MS0 1386 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 DDX60LQ5H9U9 1706 aaKnown RBP16.17■□□□□ 0.18
LDB3-204ENST00000372066 BTBD19C9JJ37 291 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 LDHBP07195 334 aaKnown RBP16.17■□□□□ 0.18
LDB3-204ENST00000372066 PDE4BQ07343 736 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 IFIT1BQ5T764 474 aaKnown RBP16.17■□□□□ 0.18
LDB3-204ENST00000372066 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.17■□□□□ 0.18
LDB3-204ENST00000372066 ZNF341Q9BYN7 854 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.17■□□□□ 0.18
LDB3-204ENST00000372066 PTCH2Q9Y6C5 1203 aa16.17■□□□□ 0.18
LDB3-204ENST00000372066 FAM237AA0A1B0GTK4 181 aa16.16■□□□□ 0.18
LDB3-204ENST00000372066 TLR2O60603 784 aa16.16■□□□□ 0.18
LDB3-204ENST00000372066 PRDX5P30044 214 aa16.16■□□□□ 0.18
LDB3-204ENST00000372066 AKAP17AQ02040 695 aaKnown RBP16.16■□□□□ 0.18
LDB3-204ENST00000372066 PPIL2Q13356 520 aa16.16■□□□□ 0.18
LDB3-204ENST00000372066 KIF22Q14807 665 aa16.16■□□□□ 0.18
LDB3-204ENST00000372066 SLC9C1Q4G0N8 1177 aa16.16■□□□□ 0.18
LDB3-204ENST00000372066 CCDC178Q5BJE1 867 aa16.16■□□□□ 0.18
LDB3-204ENST00000372066 RILPL1Q5EBL4 403 aa16.16■□□□□ 0.18
LDB3-204ENST00000372066 NOSTRINQ8IVI9 506 aa16.16■□□□□ 0.18
LDB3-204ENST00000372066 ENAHQ8N8S7 591 aaPredicted RBP16.16■□□□□ 0.18
LDB3-204ENST00000372066 FAM151AQ8WW52 585 aa16.16■□□□□ 0.18
LDB3-204ENST00000372066 AIFM3Q96NN9 605 aa16.16■□□□□ 0.18
LDB3-204ENST00000372066 ZKSCAN3Q9BRR0 538 aa16.16■□□□□ 0.18
LDB3-204ENST00000372066 NOL10Q9BSC4 688 aaKnown RBP16.16■□□□□ 0.18
LDB3-204ENST00000372066 NAT10Q9H0A0 1025 aaKnown RBP16.16■□□□□ 0.18
LDB3-204ENST00000372066 AATFQ9NY61 560 aaKnown RBP eCLIP16.16■□□□□ 0.18
LDB3-204ENST00000372066 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.16■□□□□ 0.18
LDB3-204ENST00000372066 USP17L12C9JPN9 530 aa16.15■□□□□ 0.18
LDB3-204ENST00000372066 USP17L21D6R901 530 aa16.15■□□□□ 0.18
LDB3-204ENST00000372066 CUTAO60888 179 aa16.15■□□□□ 0.18
LDB3-204ENST00000372066 BAG3O95817 575 aa16.15■□□□□ 0.18
LDB3-204ENST00000372066 PPP4CP60510 307 aa16.15■□□□□ 0.18
LDB3-204ENST00000372066 TCP10Q12799 353 aa16.15■□□□□ 0.18
LDB3-204ENST00000372066 AXDND1Q5T1B0 1012 aaPredicted RBP16.15■□□□□ 0.18
LDB3-204ENST00000372066 AMOTL1Q8IY63 956 aa16.15■□□□□ 0.18
LDB3-204ENST00000372066 ZNF333Q96JL9 665 aa16.15■□□□□ 0.18
LDB3-204ENST00000372066 GJB4Q9NTQ9 266 aa16.15■□□□□ 0.18
LDB3-204ENST00000372066 GOLGA6L19H0YKK7 550 aa16.14■□□□□ 0.17
LDB3-204ENST00000372066 INPP5BP32019 993 aa16.14■□□□□ 0.17
LDB3-204ENST00000372066 PPATQ06203 517 aa16.14■□□□□ 0.17
LDB3-204ENST00000372066 PTPAQ15257 358 aa16.14■□□□□ 0.17
LDB3-204ENST00000372066 DIXDC1Q155Q3 683 aa16.14■□□□□ 0.17
LDB3-204ENST00000372066 SLC4A8Q2Y0W8 1093 aa16.14■□□□□ 0.17
LDB3-204ENST00000372066 CDC42EP5Q6NZY7 148 aa16.14■□□□□ 0.17
LDB3-204ENST00000372066 CEP57L1Q8IYX8 460 aa16.14■□□□□ 0.17
LDB3-204ENST00000372066 MAP3K14Q99558 947 aa16.14■□□□□ 0.17
LDB3-204ENST00000372066 SDF4Q9BRK5 362 aa16.14■□□□□ 0.17
LDB3-204ENST00000372066 ZCCHC17Q9NP64 241 aaKnown RBP16.14■□□□□ 0.17
LDB3-204ENST00000372066 CEP131Q9UPN4 1083 aa16.14■□□□□ 0.17
LDB3-204ENST00000372066 DAGLAQ9Y4D2 1042 aa16.14■□□□□ 0.17
LDB3-204ENST00000372066 PRPF3O43395 683 aaKnown RBP16.13■□□□□ 0.17
LDB3-204ENST00000372066 MYCP01106 439 aaPredicted RBP16.13■□□□□ 0.17
LDB3-204ENST00000372066 NDUFA8P51970 172 aa16.13■□□□□ 0.17
LDB3-204ENST00000372066 SARM1Q6SZW1 724 aa16.13■□□□□ 0.17
LDB3-204ENST00000372066 LUZP1Q86V48 1076 aa16.13■□□□□ 0.17
LDB3-204ENST00000372066 DIS3L2Q8IYB7 885 aaKnown RBP16.13■□□□□ 0.17
LDB3-204ENST00000372066 ELOA2Q8IYF1 753 aaPredicted RBP16.13■□□□□ 0.17
LDB3-204ENST00000372066 NUP133Q8WUM0 1156 aa16.13■□□□□ 0.17
LDB3-204ENST00000372066 ARHGAP39Q9C0H5 1083 aa16.13■□□□□ 0.17
LDB3-204ENST00000372066 DNAJC25Q9H1X3 360 aa16.13■□□□□ 0.17
LDB3-204ENST00000372066 USP40Q9NVE5 1235 aa16.13■□□□□ 0.17
LDB3-204ENST00000372066 MYH1P12882 1939 aa16.13■□□□□ 0.17
LDB3-204ENST00000372066 A0A1B0GVL5 298 aa16.13■□□□□ 0.17
LDB3-204ENST00000372066 OFD1O75665 1012 aa16.13■□□□□ 0.17
LDB3-204ENST00000372066 ECM2O94769 699 aaPredicted RBP16.13■□□□□ 0.17
LDB3-204ENST00000372066 CDC25BP30305 580 aa16.13■□□□□ 0.17
LDB3-204ENST00000372066 LACTBP83111 547 aaPredicted RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms