RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 WTAPQ15007 396 aa17.67■□□□□ 0.42
SMPDL3A-201ENST00000368440 GPR142Q7Z601 462 aa17.67■□□□□ 0.42
SMPDL3A-201ENST00000368440 FAM160B2Q86V87 743 aa17.67■□□□□ 0.42
SMPDL3A-201ENST00000368440 HPS5Q9UPZ3 1129 aa17.67■□□□□ 0.42
SMPDL3A-201ENST00000368440 CENPFP49454 3210 aa17.66■□□□□ 0.42
SMPDL3A-201ENST00000368440 PLA2G6O60733 806 aa17.66■□□□□ 0.42
SMPDL3A-201ENST00000368440 FLT3LGP49771 235 aa17.66■□□□□ 0.42
SMPDL3A-201ENST00000368440 CCNA1P78396 465 aa17.66■□□□□ 0.42
SMPDL3A-201ENST00000368440 WDR78Q5VTH9 848 aa17.66■□□□□ 0.42
SMPDL3A-201ENST00000368440 CHURC1Q8WUH1 139 aa17.66■□□□□ 0.42
SMPDL3A-201ENST00000368440 COA7Q96BR5 231 aa17.66■□□□□ 0.42
SMPDL3A-201ENST00000368440 TCEANC2Q96MN5 208 aa17.66■□□□□ 0.42
SMPDL3A-201ENST00000368440 CPVLQ9H3G5 476 aa17.66■□□□□ 0.42
SMPDL3A-201ENST00000368440 LY9Q9HBG7 655 aa17.66■□□□□ 0.42
SMPDL3A-201ENST00000368440 SLC38A10Q9HBR0 1119 aa17.66■□□□□ 0.42
SMPDL3A-201ENST00000368440 PRR12Q9ULL5 1215 aa17.66■□□□□ 0.42
SMPDL3A-201ENST00000368440 ZNF236Q9UL36 1845 aa17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 ERICH2A1L162 156 aa17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 SH2B2O14492 632 aaPredicted RBP17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 SEC24BO95487 1268 aa17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 CPA1P15085 419 aa17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 ERCC3P19447 782 aa17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 HOXD10P28358 340 aa17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 SART3Q15020 963 aaKnown RBP17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 BTNL9Q6UXG8 535 aa17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 CCAR1Q8IX12 1150 aaKnown RBP17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 ABHD8Q96I13 439 aa17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 RAVER2Q9HCJ3 691 aaKnown RBP17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 GJD2Q9UKL4 321 aa17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 EPB41L2O43491 1005 aaKnown RBP17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 ZBED4O75132 1171 aa17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 PLEKHH3Q7Z736 793 aa17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 CPXCR1Q8N123 301 aa17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 RIPK3Q9Y572 518 aa17.65■□□□□ 0.42
SMPDL3A-201ENST00000368440 ZNF536O15090 1300 aa17.64■□□□□ 0.41
SMPDL3A-201ENST00000368440 STAT3P40763 770 aa17.64■□□□□ 0.41
SMPDL3A-201ENST00000368440 PRMT2P55345 433 aa17.64■□□□□ 0.41
SMPDL3A-201ENST00000368440 KRT32Q14532 448 aa17.64■□□□□ 0.41
SMPDL3A-201ENST00000368440 SYDE2Q5VT97 1194 aa17.64■□□□□ 0.41
SMPDL3A-201ENST00000368440 SNRNP48Q6IEG0 339 aaKnown RBP17.64■□□□□ 0.41
SMPDL3A-201ENST00000368440 NCAPG2Q86XI2 1143 aa17.64■□□□□ 0.41
SMPDL3A-201ENST00000368440 RIOX2Q8IUF8 465 aa17.64■□□□□ 0.41
SMPDL3A-201ENST00000368440 JAKMIP1Q96N16 626 aaKnown RBP17.64■□□□□ 0.41
SMPDL3A-201ENST00000368440 ZNFX1Q9P2E3 1918 aaKnown RBP17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 TAL1P17542 331 aaPredicted RBP17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 EXOSC10Q01780 885 aaKnown RBP17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 C8orf34Q49A92 452 aa17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 MORN1Q5T089 497 aa17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 STAG2Q8N3U4 1231 aa17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 SHCBP1Q8NEM2 672 aa17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 RAET1EQ8TD07 263 aa17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 TMEM87BQ96K49 555 aa17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 MTA3Q9BTC8 594 aa17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 MYL10Q9BUA6 226 aa17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 UBA5Q9GZZ9 404 aa17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 CWC22Q9HCG8 908 aaKnown RBP17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 SMCHD1A6NHR9 2005 aa17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 ATP2A1O14983 1001 aa17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 SLC4A3P48751 1232 aa17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 GPATCH4Q5T3I0 446 aaKnown RBP17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 CCDC174Q6PII3 467 aa17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 SH3TC2Q8TF17 1288 aa17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 TEX13BQ9BXU2 312 aa17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 CTDP1Q9Y5B0 961 aaPredicted RBP17.63■□□□□ 0.41
SMPDL3A-201ENST00000368440 PARP1P09874 1014 aaKnown RBP17.62■□□□□ 0.41
SMPDL3A-201ENST00000368440 PTPREP23469 700 aa17.62■□□□□ 0.41
SMPDL3A-201ENST00000368440 TROAPQ12815 778 aa17.62■□□□□ 0.41
SMPDL3A-201ENST00000368440 ASPRV1Q53RT3 343 aa17.62■□□□□ 0.41
SMPDL3A-201ENST00000368440 DHX32Q7L7V1 743 aaKnown RBP17.62■□□□□ 0.41
SMPDL3A-201ENST00000368440 ZNF654Q8IZM8 581 aa17.62■□□□□ 0.41
SMPDL3A-201ENST00000368440 USP6NLQ92738 828 aa17.62■□□□□ 0.41
SMPDL3A-201ENST00000368440 AGBL1Q96MI9 1066 aa17.62■□□□□ 0.41
SMPDL3A-201ENST00000368440 RANBP17Q9H2T7 1088 aaKnown RBP17.62■□□□□ 0.41
SMPDL3A-201ENST00000368440 MAD2L2Q9UI95 211 aa17.62■□□□□ 0.41
SMPDL3A-201ENST00000368440 PLXNA1Q9UIW2 1896 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 SLC25A27O95847 323 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 ELNP15502 786 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 CYP2B6P20813 491 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 GRB14Q14449 540 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 GRM4Q14833 912 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 NUDT12Q9BQG2 462 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 MROH8Q9H579 483 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 MYH6P13533 1939 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 WDR19Q8NEZ3 1342 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 FDX1P10109 184 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 LIFRP42702 1097 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 OAZ1P54368 228 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 IRF5Q13568 498 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 SLC9C1Q4G0N8 1177 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 RAB11FIP4Q86YS3 637 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 SOCS4Q8WXH5 440 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 IVNS1ABPQ9Y6Y0 642 aa17.61■□□□□ 0.41
SMPDL3A-201ENST00000368440 PALM3A6NDB9 673 aaPredicted RBP17.6■□□□□ 0.41
SMPDL3A-201ENST00000368440 SLC15A5A6NIM6 579 aa17.6■□□□□ 0.41
SMPDL3A-201ENST00000368440 ADCY3O60266 1144 aa17.6■□□□□ 0.41
SMPDL3A-201ENST00000368440 GRK4P32298 578 aa17.6■□□□□ 0.41
SMPDL3A-201ENST00000368440 SLC35G1Q2M3R5 365 aa17.6■□□□□ 0.41
SMPDL3A-201ENST00000368440 NFXL1Q6ZNB6 911 aa17.6■□□□□ 0.41
SMPDL3A-201ENST00000368440 CATIPQ7Z7H3 387 aa17.6■□□□□ 0.41
SMPDL3A-201ENST00000368440 NUP133Q8WUM0 1156 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms