RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 NTRK3Q16288 839 aa11.51□□□□□ -0.57
SYNE1-203ENST00000354674 IFIT1BQ5T764 474 aaKnown RBP11.51□□□□□ -0.57
SYNE1-203ENST00000354674 EIF3CQ99613 913 aaKnown RBP11.51□□□□□ -0.57
SYNE1-203ENST00000354674 EGFRP00533 1210 aa11.5□□□□□ -0.57
SYNE1-203ENST00000354674 SYT1P21579 422 aa11.5□□□□□ -0.57
SYNE1-203ENST00000354674 CDC27P30260 824 aa11.5□□□□□ -0.57
SYNE1-203ENST00000354674 TROAPQ12815 778 aa11.5□□□□□ -0.57
SYNE1-203ENST00000354674 SMC1AQ14683 1233 aaKnown RBP11.5□□□□□ -0.57
SYNE1-203ENST00000354674 HOMER1Q86YM7 354 aa11.5□□□□□ -0.57
SYNE1-203ENST00000354674 ANKRD20A12PQ8NF67 263 aa11.5□□□□□ -0.57
SYNE1-203ENST00000354674 GJA3Q9Y6H8 435 aa11.5□□□□□ -0.57
SYNE1-203ENST00000354674 CLRN2A0PK11 232 aa11.5□□□□□ -0.57
SYNE1-203ENST00000354674 VPS37CA5D8V6 355 aaPredicted RBP11.5□□□□□ -0.57
SYNE1-203ENST00000354674 MYO1BO43795 1136 aa11.5□□□□□ -0.57
SYNE1-203ENST00000354674 DDAH1O94760 285 aa11.5□□□□□ -0.57
SYNE1-203ENST00000354674 MAP3K10Q02779 954 aa11.5□□□□□ -0.57
SYNE1-203ENST00000354674 MAP3K14Q99558 947 aa11.5□□□□□ -0.57
SYNE1-203ENST00000354674 DNAJC25Q9H1X3 360 aa11.5□□□□□ -0.57
SYNE1-203ENST00000354674 GPRC5DQ9NZD1 345 aa11.5□□□□□ -0.57
SYNE1-203ENST00000354674 VPS18Q9P253 973 aa11.5□□□□□ -0.57
SYNE1-203ENST00000354674 PTPDC1A2A3K4 754 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 CCDC192P0DO97 292 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 FDPSP14324 419 aaKnown RBP11.49□□□□□ -0.57
SYNE1-203ENST00000354674 SYNE3Q6ZMZ3 975 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 RPAINQ86UA6 219 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 UBXN4Q92575 508 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 ADAM21Q9UKJ8 722 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 FRMD3A2A2Y4 597 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 GOLGA8AA7E2F4 631 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 TCP10L2B9ZVM9 353 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 TBC1D12O60347 775 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 CALM1P0DP23 149 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 CALM2P0DP24 149 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 CALM3P0DP25 149 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 MCM6Q14566 821 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 SYCP1Q15431 976 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 NOM1Q5C9Z4 860 aaKnown RBP11.49□□□□□ -0.57
SYNE1-203ENST00000354674 FANCBQ8NB91 859 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 CCDC17Q96LX7 622 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 MYL10Q9BUA6 226 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 CBX8Q9HC52 389 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 FAM53CQ9NYF3 392 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 UTRNP46939 3433 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 TCHHQ07283 1943 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 STX6O43752 255 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 PDCP20941 246 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 ADD1P35611 737 aaKnown RBP11.49□□□□□ -0.57
SYNE1-203ENST00000354674 PTPN21Q16825 1174 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 CATIPQ7Z7H3 387 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 MICU3Q86XE3 530 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 RNF181Q9P0P0 153 aa11.49□□□□□ -0.57
SYNE1-203ENST00000354674 HERC5Q9UII4 1024 aaKnown RBP11.49□□□□□ -0.57
SYNE1-203ENST00000354674 SOCS7O14512 581 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 AKR1B1P15121 316 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 SATB1Q01826 763 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 C9orf131Q5VYM1 1079 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 LEKR1Q6ZMV7 388 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 SAMD7Q7Z3H4 446 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 CCDC91Q7Z6B0 441 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 FBXO18Q8NFZ0 1043 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 ERCC4Q92889 916 aaPredicted RBP11.48□□□□□ -0.57
SYNE1-203ENST00000354674 WDR33Q9C0J8 1336 aaKnown RBP11.48□□□□□ -0.57
SYNE1-203ENST00000354674 IFNAR1P17181 557 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 ATP2B2Q01814 1243 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 KIF4BQ2VIQ3 1234 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 LRCH2Q5VUJ6 765 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 WWC2Q6AWC2 1192 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 NBPF11Q86T75 865 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 RAB11FIP4Q86YS3 637 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 REXO1L1PQ8IX06 675 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 MTMR6Q9Y217 621 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 SRCAPQ6ZRS2 3230 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 STK36Q9NRP7 1315 aa11.48□□□□□ -0.57
SYNE1-203ENST00000354674 ZC3H4Q9UPT8 1303 aaKnown RBP11.48□□□□□ -0.57
SYNE1-203ENST00000354674 CCDC196A0A1B0GTZ2 297 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 CDKL5O76039 1030 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 URI1O94763 535 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-203ENST00000354674 TPM3P06753 285 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 RXRAP19793 462 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 TYRO3Q06418 890 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 RTN1Q16799 776 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 CEP95Q96GE4 821 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 CSRNP1Q96S65 589 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 MTMR4Q9NYA4 1195 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 DONSONQ9NYP3 566 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 TFIP11Q9UBB9 837 aaKnown RBP11.47□□□□□ -0.57
SYNE1-203ENST00000354674 H7C1D1 291 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 SLURP2P0DP57 97 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 LIG1P18858 919 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 LIG3P49916 1009 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 ZNF75DP51815 510 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 FUT2Q10981 343 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 LARP1BQ659C4 914 aaKnown RBP11.47□□□□□ -0.57
SYNE1-203ENST00000354674 ZSCAN29Q8IWY8 852 aaPredicted RBP11.47□□□□□ -0.57
SYNE1-203ENST00000354674 KIRREL3Q8IZU9 778 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 MNS1Q8NEH6 495 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 TEPSINQ96N21 525 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 TMEM47Q9BQJ4 181 aa11.47□□□□□ -0.57
SYNE1-203ENST00000354674 RBM28Q9NW13 759 aaKnown RBP11.47□□□□□ -0.57
SYNE1-203ENST00000354674 ZSCAN22P10073 491 aaPredicted RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms