RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 HIBCHQ6NVY1 386 aaPredicted RBP9.58□□□□□ -0.88
RTN3-202ENST00000339997 UBL4BQ8N7F7 174 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 FANCBQ8NB91 859 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 FRMPD2Q68DX3 1309 aaPredicted RBP9.58□□□□□ -0.88
RTN3-202ENST00000339997 SMCO2A6NFE2 343 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 POC1B-GALNT4F8VUJ3 575 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 OPHN1O60890 802 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 PDCLQ13371 301 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 CCDC62Q6P9F0 684 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 CCDC84Q86UT8 332 aaPredicted RBP9.58□□□□□ -0.88
RTN3-202ENST00000339997 SPATA5Q8NB90 893 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 TRIM58Q8NG06 486 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 SEPT10Q9P0V9 454 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 ANAPC4Q9UJX5 808 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 INTUQ9ULD6 942 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 KDM5DQ9BY66 1539 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 PLCH2O75038 1416 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 ZMYM4Q5VZL5 1548 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 NEURL1BA8MQ27 555 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 STX10O60499 249 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 HEXIM1O94992 359 aaKnown RBP9.57□□□□□ -0.88
RTN3-202ENST00000339997 ATF7P17544 494 aaPredicted RBP9.57□□□□□ -0.88
RTN3-202ENST00000339997 CA8P35219 290 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 SEPT6Q14141 434 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 CASP8Q14790 479 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 GBP7Q8N8V2 638 aaPredicted RBP9.57□□□□□ -0.88
RTN3-202ENST00000339997 PLBD2Q8NHP8 589 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 SREK1Q8WXA9 508 aaKnown RBP9.57□□□□□ -0.88
RTN3-202ENST00000339997 MAP4K1Q92918 833 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 NUP58Q9BVL2 599 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.57□□□□□ -0.88
RTN3-202ENST00000339997 TNKSO95271 1327 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 RAPGEF6Q8TEU7 1601 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 SAT1P21673 171 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 ADCY8P40145 1251 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 PLTPP55058 493 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 PRKG1Q13976 671 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 OTUD6AQ7L8S5 288 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 NSUN7Q8NE18 718 aaKnown RBP9.57□□□□□ -0.88
RTN3-202ENST00000339997 CFAP61Q8NHU2 1237 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 FAM71BQ8TC56 605 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 TRIM6Q9C030 488 aaPredicted RBP9.57□□□□□ -0.88
RTN3-202ENST00000339997 HAUS4Q9H6D7 363 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 PFDN4Q9NQP4 134 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 RBM28Q9NW13 759 aaKnown RBP9.57□□□□□ -0.88
RTN3-202ENST00000339997 HYOU1Q9Y4L1 999 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 IFT140Q96RY7 1462 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 GBP1P32455 592 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 ACTN3Q08043 901 aaPredicted RBP9.57□□□□□ -0.88
RTN3-202ENST00000339997 PUM3Q15397 648 aaKnown RBP9.57□□□□□ -0.88
RTN3-202ENST00000339997 TAOK1Q7L7X3 1001 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 DCAF5Q96JK2 942 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 MLXIPLQ9NP71 852 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 KLHL14Q9P2G3 628 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 ESYT3A0FGR9 886 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 PSDA5PKW4 1024 aaPredicted RBP9.57□□□□□ -0.88
RTN3-202ENST00000339997 TRIM66O15016 1216 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 HIBADHP31937 336 aaKnown RBP9.57□□□□□ -0.88
RTN3-202ENST00000339997 COPB1P53618 953 aaKnown RBP9.57□□□□□ -0.88
RTN3-202ENST00000339997 COG7P83436 770 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 SNX1Q13596 522 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 SPATA1Q5VX52 437 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 CYP4F22Q6NT55 531 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 TPTE2Q6XPS3 522 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 TUBGCP2Q9BSJ2 902 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 ODF2LQ9ULJ1 636 aa9.57□□□□□ -0.88
RTN3-202ENST00000339997 CTNND1O60716 968 aaKnown RBP9.56□□□□□ -0.88
RTN3-202ENST00000339997 MOCS3O95396 460 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 SLC1A4P43007 532 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 TRIP13Q15645 432 aaPredicted RBP9.56□□□□□ -0.88
RTN3-202ENST00000339997 IFNL3Q8IZI9 196 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 OGFOD1Q8N543 542 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 AMFRQ9UKV5 643 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 DEPDC5O75140 1603 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 WDR91A4D1P6 747 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 ARHGEF35A5YM69 484 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 SNAP23O00161 211 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 KRT19P08727 400 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 WDR44Q5JSH3 913 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 AP1M1Q9BXS5 423 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 ZDHHC9Q9Y397 364 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 LRRN2O75325 713 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 STAT1P42224 750 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 NSMFQ6X4W1 530 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 SCYL3Q8IZE3 742 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 REXO1Q8N1G1 1221 aaKnown RBP9.56□□□□□ -0.88
RTN3-202ENST00000339997 MORC4Q8TE76 937 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 DDX12PQ92771 950 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 ZNF274Q96GC6 653 aaPredicted RBP9.56□□□□□ -0.88
RTN3-202ENST00000339997 GBP5Q96PP8 586 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 VCX3BQ9H321 246 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 ARPP21Q9UBL0 812 aaPredicted RBP9.56□□□□□ -0.88
RTN3-202ENST00000339997 MAGED2Q9UNF1 606 aaPredicted RBP9.56□□□□□ -0.88
RTN3-202ENST00000339997 DNM3Q9UQ16 869 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 TRPM1Q7Z4N2 1603 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 SH3TC1Q8TE82 1336 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 SAMD9LQ8IVG5 1584 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 H0Y3Z8 333 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 PRKAB2O43741 272 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 IL2RBP14784 551 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms