RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 MAP3K14Q99558 947 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 SALL1Q9NSC2 1324 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 ADAMTS3O15072 1205 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 N4BP1O75113 896 aaKnown RBP13.38□□□□□ -0.27
USP1-201ENST00000339950 CALM1P0DP23 149 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 CALM2P0DP24 149 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 CALM3P0DP25 149 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 CABP7Q86V35 215 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 INTS13Q9NVM9 706 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 RTCBQ9Y3I0 505 aaKnown RBP13.38□□□□□ -0.27
USP1-201ENST00000339950 CHMP2AO43633 222 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 STX10O60499 249 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 FCER1AP12319 257 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 HNRNPH2P55795 449 aaKnown RBP13.38□□□□□ -0.27
USP1-201ENST00000339950 FNBP4Q8N3X1 1017 aaPredicted RBP13.38□□□□□ -0.27
USP1-201ENST00000339950 ENOX1Q8TC92 643 aaKnown RBP13.38□□□□□ -0.27
USP1-201ENST00000339950 ABCB6Q9NP58 842 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 BCS1LQ9Y276 419 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 FAN1Q9Y2M0 1017 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 MORC2Q9Y6X9 1032 aaPredicted RBP13.38□□□□□ -0.27
USP1-201ENST00000339950 GOLGA6L9A6NEM1 432 aa13.37□□□□□ -0.27
USP1-201ENST00000339950 PARP1P09874 1014 aaKnown RBP13.37□□□□□ -0.27
USP1-201ENST00000339950 KIF5AQ12840 1032 aa13.37□□□□□ -0.27
USP1-201ENST00000339950 UBE2SQ16763 222 aa13.37□□□□□ -0.27
USP1-201ENST00000339950 DNAAF5Q86Y56 855 aa13.37□□□□□ -0.27
USP1-201ENST00000339950 AGXT2Q9BYV1 514 aa13.37□□□□□ -0.27
USP1-201ENST00000339950 EPN1Q9Y6I3 576 aaPredicted RBP13.37□□□□□ -0.27
USP1-201ENST00000339950 ADAT2Q7Z6V5 191 aaKnown RBP13.37□□□□□ -0.27
USP1-201ENST00000339950 REXO1L1PQ8IX06 675 aa13.37□□□□□ -0.27
USP1-201ENST00000339950 JAKMIP2Q96AA8 810 aa13.37□□□□□ -0.27
USP1-201ENST00000339950 TMEM60Q9H2L4 133 aa13.37□□□□□ -0.27
USP1-201ENST00000339950 ZNF446Q9NWS9 450 aa13.37□□□□□ -0.27
USP1-201ENST00000339950 ZNF185O15231 689 aa13.37□□□□□ -0.27
USP1-201ENST00000339950 MFSD14BQ5SR56 506 aa13.37□□□□□ -0.27
USP1-201ENST00000339950 PIGSQ96S52 555 aa13.37□□□□□ -0.27
USP1-201ENST00000339950 EYA3Q99504 573 aa13.37□□□□□ -0.27
USP1-201ENST00000339950 RNF26Q9BY78 433 aaPredicted RBP13.37□□□□□ -0.27
USP1-201ENST00000339950 DCP1AQ9NPI6 582 aaPredicted RBP13.37□□□□□ -0.27
USP1-201ENST00000339950 PARP10Q53GL7 1025 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 DCAF17Q5H9S7 520 aaPredicted RBP13.36□□□□□ -0.27
USP1-201ENST00000339950 TMC4Q7Z404 712 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 TRIM31Q9BZY9 425 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 DUSP10Q9Y6W6 482 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 SMIM23A6NLE4 172 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 MNAT1P51948 309 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 RAPGEF1Q13905 1077 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 RDH13Q8NBN7 331 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 SNX29Q8TEQ0 813 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 MXD3Q9BW11 206 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 PARP3Q9Y6F1 533 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 TTC26A0AVF1 554 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 POTEMA6NI47 508 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 EFCAB8A8MWE9 144 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 UBXN2AP68543 259 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 CYP4A11Q02928 519 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 ZFYVE27Q5T4F4 411 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 MSL1Q68DK7 614 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 KCTD16Q68DU8 428 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 KCTD1Q719H9 257 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 SGMS1Q86VZ5 419 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 STAG1Q8WVM7 1258 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 LRWD1Q9UFC0 647 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 TUBE1Q9UJT0 475 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 ZBTB21Q9ULJ3 1066 aa13.36□□□□□ -0.27
USP1-201ENST00000339950 PLCG1P19174 1290 aa13.35□□□□□ -0.27
USP1-201ENST00000339950 RDXP35241 583 aaKnown RBP13.35□□□□□ -0.27
USP1-201ENST00000339950 DPYDQ12882 1025 aa13.35□□□□□ -0.27
USP1-201ENST00000339950 NFIXQ14938 502 aa13.35□□□□□ -0.27
USP1-201ENST00000339950 ODF2Q5BJF6 829 aa13.35□□□□□ -0.27
USP1-201ENST00000339950 CYP26C1Q6V0L0 522 aa13.35□□□□□ -0.27
USP1-201ENST00000339950 CCDC155Q8N6L0 562 aa13.35□□□□□ -0.27
USP1-201ENST00000339950 EHD2Q9NZN4 543 aa13.35□□□□□ -0.27
USP1-201ENST00000339950 ADGRG1Q9Y653 693 aa13.35□□□□□ -0.27
USP1-201ENST00000339950 ZNF804BA4D1E1 1349 aa13.35□□□□□ -0.27
USP1-201ENST00000339950 CALML3P27482 149 aa13.35□□□□□ -0.27
USP1-201ENST00000339950 C2orf54Q08AI8 447 aa13.35□□□□□ -0.27
USP1-201ENST00000339950 NOA1Q8NC60 698 aaKnown RBP13.35□□□□□ -0.27
USP1-201ENST00000339950 AGPAT5Q9NUQ2 364 aa13.35□□□□□ -0.27
USP1-201ENST00000339950 MEIS1O00470 390 aa13.35□□□□□ -0.27
USP1-201ENST00000339950 TADA3O75528 432 aa13.35□□□□□ -0.27
USP1-201ENST00000339950 SND1Q7KZF4 910 aaKnown RBP eCLIP13.35□□□□□ -0.27
USP1-201ENST00000339950 OR8K1Q8NGG5 319 aa13.35□□□□□ -0.27
USP1-201ENST00000339950 RRP36Q96EU6 259 aaKnown RBP13.35□□□□□ -0.27
USP1-201ENST00000339950 TUBGCP2Q9BSJ2 902 aa13.35□□□□□ -0.27
USP1-201ENST00000339950 ACTN4O43707 911 aaKnown RBP13.34□□□□□ -0.27
USP1-201ENST00000339950 GUCY2FP51841 1108 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 TMTC3Q6ZXV5 915 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 KLHL7Q8IXQ5 586 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 SPICE1Q8N0Z3 855 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 CNBD1Q8NA66 436 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 FERMT2Q96AC1 680 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 RASSF4Q9H2L5 321 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 RBM28Q9NW13 759 aaKnown RBP13.34□□□□□ -0.27
USP1-201ENST00000339950 RMND1Q9NWS8 449 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 SCAF8Q9UPN6 1271 aaKnown RBP13.34□□□□□ -0.27
USP1-201ENST00000339950 CYLC1P35663 651 aaPredicted RBP13.34□□□□□ -0.27
USP1-201ENST00000339950 BTDP43251 543 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 ATP1A2P50993 1020 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 SLC30A10Q6XR72 485 aa13.34□□□□□ -0.27
USP1-201ENST00000339950 CEP112Q8N8E3 955 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms