RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.33■□□□□ 0.04
HMGB1-202ENST00000339872 FZD9O00144 591 aa15.33■□□□□ 0.04
HMGB1-202ENST00000339872 EGFRP00533 1210 aa15.33■□□□□ 0.04
HMGB1-202ENST00000339872 ZNF280AP59817 542 aaPredicted RBP15.33■□□□□ 0.04
HMGB1-202ENST00000339872 RESP18Q5W5W9 173 aa15.33■□□□□ 0.04
HMGB1-202ENST00000339872 GALNT17Q6IS24 598 aa15.33■□□□□ 0.04
HMGB1-202ENST00000339872 SIAH1Q8IUQ4 282 aa15.33■□□□□ 0.04
HMGB1-202ENST00000339872 FAM177A1Q8N128 213 aaPredicted RBP15.33■□□□□ 0.04
HMGB1-202ENST00000339872 MRVI1Q9Y6F6 885 aa15.33■□□□□ 0.04
HMGB1-202ENST00000339872 PTPREP23469 700 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 SLC16A2P36021 539 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 SLC1A4P43007 532 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 ZNF174Q15697 407 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 SLFN13Q68D06 897 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 SASS6Q6UVJ0 657 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 MICALL2Q8IY33 904 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 ADGRF4Q8IZF3 695 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 ZMYND12Q9H0C1 365 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 CCDC194A0A1B0GVG4 234 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 M0R2N6 131 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 ZNF202O95125 648 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 TRAPPC10P48553 1259 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 MMP14P50281 582 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 GRIN1Q05586 938 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 DCAF4Q8WV16 495 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 SDF4Q9BRK5 362 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 JMJD4Q9H9V9 463 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 PCDHA6Q9UN73 950 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 SCAF8Q9UPN6 1271 aaKnown RBP15.32■□□□□ 0.04
HMGB1-202ENST00000339872 PCDHA8Q9Y5H6 950 aa15.32■□□□□ 0.04
HMGB1-202ENST00000339872 ZNF541Q9H0D2 1346 aa15.31■□□□□ 0.04
HMGB1-202ENST00000339872 SMCO2A6NFE2 343 aa15.31■□□□□ 0.04
HMGB1-202ENST00000339872 hCG_1984214I3L0E3 225 aa15.31■□□□□ 0.04
HMGB1-202ENST00000339872 BMP15O95972 392 aa15.31■□□□□ 0.04
HMGB1-202ENST00000339872 SYKP43405 635 aa15.31■□□□□ 0.04
HMGB1-202ENST00000339872 TNNI2P48788 182 aa15.31■□□□□ 0.04
HMGB1-202ENST00000339872 SPECC1Q5M775 1068 aa15.31■□□□□ 0.04
HMGB1-202ENST00000339872 MIGA2Q7L4E1 593 aa15.31■□□□□ 0.04
HMGB1-202ENST00000339872 ZNF713Q8N859 430 aaPredicted RBP15.31■□□□□ 0.04
HMGB1-202ENST00000339872 C6orf50Q9HD87 102 aa15.31■□□□□ 0.04
HMGB1-202ENST00000339872 HPSEQ9Y251 543 aa15.31■□□□□ 0.04
HMGB1-202ENST00000339872 SRPRBQ9Y5M8 271 aaKnown RBP15.31■□□□□ 0.04
HMGB1-202ENST00000339872 DICER1Q9UPY3 1922 aaKnown RBP15.31■□□□□ 0.04
HMGB1-202ENST00000339872 SAMD7Q7Z3H4 446 aa15.31■□□□□ 0.04
HMGB1-202ENST00000339872 DPF2Q92785 391 aa15.31■□□□□ 0.04
HMGB1-202ENST00000339872 CNOT7Q9UIV1 285 aaKnown RBP15.31■□□□□ 0.04
HMGB1-202ENST00000339872 F5H6K3 240 aa15.3■□□□□ 0.04
HMGB1-202ENST00000339872 GNA11P29992 359 aa15.3■□□□□ 0.04
HMGB1-202ENST00000339872 KLRC3Q07444 240 aa15.3■□□□□ 0.04
HMGB1-202ENST00000339872 TBC1D10BQ4KMP7 808 aaPredicted RBP15.3■□□□□ 0.04
HMGB1-202ENST00000339872 GMCL1P1Q8NEA9 526 aa15.3■□□□□ 0.04
HMGB1-202ENST00000339872 COA7Q96BR5 231 aa15.3■□□□□ 0.04
HMGB1-202ENST00000339872 FHDC1Q9C0D6 1143 aaPredicted RBP15.3■□□□□ 0.04
HMGB1-202ENST00000339872 PNMA6FA0A0J9YX94 578 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 FAM237AA0A1B0GTK4 181 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 USP17L10C9JJH3 530 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 TBC1D12O60347 775 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 MCM7P33993 719 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 RASA3Q14644 834 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 ARHGAP27Q6ZUM4 889 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 ERCC4Q92889 916 aaPredicted RBP15.29■□□□□ 0.04
HMGB1-202ENST00000339872 ZBTB21Q9ULJ3 1066 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 MORC2Q9Y6X9 1032 aaPredicted RBP15.29■□□□□ 0.04
HMGB1-202ENST00000339872 ATAD5Q96QE3 1844 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 NDUFB10O96000 172 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 PTGDRQ13258 359 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 TNFAIP1Q13829 316 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 ANO6Q4KMQ2 910 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 ZNF579Q8NAF0 562 aaKnown RBP15.29■□□□□ 0.04
HMGB1-202ENST00000339872 CSRNP2Q9H175 543 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 ARHGEF10LQ9HCE6 1279 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 FAM13BQ9NYF5 915 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 PGAP2Q9UHJ9 254 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 KCNH3Q9ULD8 1083 aa15.29■□□□□ 0.04
HMGB1-202ENST00000339872 A0A1W2PRG0 241 aa15.28■□□□□ 0.04
HMGB1-202ENST00000339872 ESYT2A0FGR8 921 aa15.28■□□□□ 0.04
HMGB1-202ENST00000339872 ZBTB5O15062 677 aa15.28■□□□□ 0.04
HMGB1-202ENST00000339872 ATP2C1P98194 919 aaPredicted RBP15.28■□□□□ 0.04
HMGB1-202ENST00000339872 INF2Q27J81 1249 aa15.28■□□□□ 0.04
HMGB1-202ENST00000339872 KIF4BQ2VIQ3 1234 aa15.28■□□□□ 0.04
HMGB1-202ENST00000339872 GMCL1Q96IK5 515 aa15.28■□□□□ 0.04
HMGB1-202ENST00000339872 NUP88Q99567 741 aaPredicted RBP15.28■□□□□ 0.04
HMGB1-202ENST00000339872 ASTN2O75129 1339 aaPredicted RBP15.28■□□□□ 0.04
HMGB1-202ENST00000339872 PPP1R11O60927 126 aaPredicted RBP15.28■□□□□ 0.04
HMGB1-202ENST00000339872 CCDC173Q0VFZ6 552 aa15.28■□□□□ 0.04
HMGB1-202ENST00000339872 KRT25Q7Z3Z0 450 aa15.28■□□□□ 0.04
HMGB1-202ENST00000339872 FERMT2Q96AC1 680 aa15.28■□□□□ 0.04
HMGB1-202ENST00000339872 TIGD1Q96MW7 591 aa15.28■□□□□ 0.04
HMGB1-202ENST00000339872 SBF1O95248 1867 aa15.27■□□□□ 0.04
HMGB1-202ENST00000339872 ECE1P42892 770 aa15.27■□□□□ 0.04
HMGB1-202ENST00000339872 ADCY7P51828 1080 aa15.27■□□□□ 0.04
HMGB1-202ENST00000339872 REXO1Q8N1G1 1221 aaKnown RBP15.27■□□□□ 0.04
HMGB1-202ENST00000339872 FAM200AQ8TCP9 573 aa15.27■□□□□ 0.04
HMGB1-202ENST00000339872 MTMR8Q96EF0 704 aa15.27■□□□□ 0.04
HMGB1-202ENST00000339872 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.27■□□□□ 0.04
HMGB1-202ENST00000339872 LMNB1P20700 586 aa15.27■□□□□ 0.03
HMGB1-202ENST00000339872 CAP2P40123 477 aa15.27■□□□□ 0.03
HMGB1-202ENST00000339872 IKQ13123 557 aaPredicted RBP15.27■□□□□ 0.03
HMGB1-202ENST00000339872 UVSSAQ2YD98 709 aa15.27■□□□□ 0.03
HMGB1-202ENST00000339872 PPP1R18Q6NYC8 613 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms