RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 KLC4Q9NSK0 619 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 FANCLQ9NW38 375 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 PIM2Q9P1W9 311 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 CFAP45Q9UL16 551 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 A0A1W2PQ27 194 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 A0A1W2PQ64 194 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 A0A1W2PQD8 194 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 MEFVO15553 781 aaPredicted RBP6.32□□□□□ -1.4
CSDE1-202ENST00000339438 RFC4P35249 363 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 SKOR1P84550 965 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 EMC10Q5UCC4 262 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 RAD9BQ6WBX8 426 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 APTXQ7Z2E3 356 aaKnown RBP6.32□□□□□ -1.4
CSDE1-202ENST00000339438 RIC3Q7Z5B4 369 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 TICAM2Q86XR7 235 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 MICAL1Q8TDZ2 1067 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 CCDC102AQ96A19 550 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 NBPF3Q9H094 633 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 ZNF112Q9UJU3 913 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 ODF2LQ9ULJ1 636 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 RBM8AQ9Y5S9 174 aaKnown RBP6.32□□□□□ -1.4
CSDE1-202ENST00000339438 SH3TC1Q8TE82 1336 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 MYH6P13533 1939 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 PDCD11Q14690 1871 aaKnown RBP6.31□□□□□ -1.4
CSDE1-202ENST00000339438 BIN1O00499 593 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 ZEB2O60315 1214 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 BBOX1O75936 387 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 ZNF18P17022 549 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 CDC27P30260 824 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 ACTN3Q08043 901 aaPredicted RBP6.31□□□□□ -1.4
CSDE1-202ENST00000339438 ADALQ6DHV7 355 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 CEP112Q8N8E3 955 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 RBM46Q8TBY0 533 aaKnown RBP6.31□□□□□ -1.4
CSDE1-202ENST00000339438 ZBTB3Q9H5J0 574 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 GPR108Q9NPR9 543 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 ADGRG1Q9Y653 693 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 EBAG9O00559 213 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 SKAP2O75563 359 aaPredicted RBP6.31□□□□□ -1.4
CSDE1-202ENST00000339438 NPM3O75607 178 aaKnown RBP6.31□□□□□ -1.4
CSDE1-202ENST00000339438 RHOXF2BP0C7M4 288 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 RBM5P52756 815 aaKnown RBP eCLIP6.31□□□□□ -1.4
CSDE1-202ENST00000339438 ATP2B2Q01814 1243 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 CCDC12Q8WUD4 166 aaPredicted RBP6.31□□□□□ -1.4
CSDE1-202ENST00000339438 RHOXF2Q9BQY4 288 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 NYXQ9GZU5 481 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 A0A1B0GVL5 298 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 PHF20L1A8MW92 1017 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 COQ9O75208 318 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 PDHBP11177 359 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 ARHGAP25P42331 645 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 PLCB4Q15147 1175 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 NAA16Q6N069 864 aaPredicted RBP6.31□□□□□ -1.4
CSDE1-202ENST00000339438 KIRREL3Q8IZU9 778 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 GIMAP7Q8NHV1 300 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 RHPN1Q8TCX5 695 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 BCAS4Q8TDM0 211 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 RTEL1Q9NZ71 1219 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 MROH7-TTC4A0A0A0MT08 1334 aa6.31□□□□□ -1.4
CSDE1-202ENST00000339438 GRM8O00222 908 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 ERLIN1O75477 346 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 UBASH3AP57075 661 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 TUBB4BP68371 445 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 CEBPZQ03701 1054 aaKnown RBP6.3□□□□□ -1.4
CSDE1-202ENST00000339438 KARSQ15046 597 aaKnown RBP6.3□□□□□ -1.4
CSDE1-202ENST00000339438 NBPF5PQ86XG9 351 aaPredicted RBP6.3□□□□□ -1.4
CSDE1-202ENST00000339438 FMNL3Q8IVF7 1028 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 FOXP4Q8IVH2 680 aaPredicted RBP6.3□□□□□ -1.4
CSDE1-202ENST00000339438 GPC2Q8N158 579 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 FSIP1Q8NA03 581 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 OR8K1Q8NGG5 319 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 PARD3BQ8TEW8 1205 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 FBXW7Q969H0 707 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 THOC1Q96FV9 657 aaKnown RBP6.3□□□□□ -1.4
CSDE1-202ENST00000339438 FAM89AQ96GI7 184 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 C9orf78Q9NZ63 289 aaPredicted RBP6.3□□□□□ -1.4
CSDE1-202ENST00000339438 SAMM50Q9Y512 469 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 MYO15AQ9UKN7 3530 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 ANKRD18BA2A2Z9 1011 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 SOWAHDA6NJG2 315 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 H0YHG0 523 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 USP14P54578 494 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 ADKP55263 362 aaKnown RBP6.3□□□□□ -1.4
CSDE1-202ENST00000339438 SARNPP82979 210 aaKnown RBP6.3□□□□□ -1.4
CSDE1-202ENST00000339438 PDE4BQ07343 736 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 PPFIA1Q13136 1202 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 TTMPQ5BVD1 217 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 SH3BP5LQ7L8J4 393 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 RASGRP2Q7LDG7 609 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 CCDC13Q8IYE1 715 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 CNTROBQ8N137 903 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 OTUD6BQ8N6M0 293 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 TTLL6Q8N841 843 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.3□□□□□ -1.4
CSDE1-202ENST00000339438 FAM84BQ96KN1 310 aaPredicted RBP6.3□□□□□ -1.4
CSDE1-202ENST00000339438 PUS3Q9BZE2 481 aaKnown RBP6.3□□□□□ -1.4
CSDE1-202ENST00000339438 ATP6V0A4Q9HBG4 840 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 NIP7Q9Y221 180 aaKnown RBP eCLIP6.3□□□□□ -1.4
CSDE1-202ENST00000339438 RASSF10A6NK89 507 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 TTC36A6NLP5 189 aa6.3□□□□□ -1.4
CSDE1-202ENST00000339438 PPEF1O14829 653 aaPredicted RBP6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms