RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 MIPOL1Q8TD10 442 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 SART1O43290 800 aaKnown RBP11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 DDB1Q16531 1140 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 GCFC2P16383 781 aaKnown RBP11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 FNBP1Q96RU3 617 aa11.34□□□□□ -0.59
CCDC88A-202ENST00000336838 PPARAQ07869 468 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 VSTM4Q8IW00 320 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 BLIDQ8IZY5 108 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 RTCBQ9Y3I0 505 aaKnown RBP11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 PPRC1Q5VV67 1664 aaKnown RBP11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 USP28Q96RU2 1077 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 AGTPBP1Q9UPW5 1226 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 A0A0D9SFI3 127 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 P4HA1P13674 534 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 SARNPP82979 210 aaKnown RBP11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 PSMD2Q13200 908 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 CDC37Q16543 378 aaPredicted RBP11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 ALKQ9UM73 1620 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 DIS3Q9Y2L1 958 aaKnown RBP11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 COMMD10Q9Y6G5 202 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 LIFRP42702 1097 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 ITIH3Q06033 890 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 POLA2Q14181 598 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 KRT26Q7Z3Y9 468 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 FANCBQ8NB91 859 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 ENOX1Q8TC92 643 aaKnown RBP11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 PBKQ96KB5 322 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 SH3GLB2Q9NR46 395 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 PPP1R1BQ9UD71 204 aaPredicted RBP11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 STK17AQ9UEE5 414 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 TULP4Q9NRJ4 1543 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 RPN1P04843 607 aaKnown RBP11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 NDUFA8P51970 172 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 JAK2O60674 1132 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 FMNL1O95466 1100 aaPredicted RBP11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 SCG2P13521 617 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 PDIA3P30101 505 aaKnown RBP11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 SNCBQ16143 134 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 SND1Q7KZF4 910 aaKnown RBP eCLIP11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 ZBTB38Q8NAP3 1195 aaPredicted RBP11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 SLF1Q9BQI6 1058 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 RIC8AQ9NPQ8 531 aa11.33□□□□□ -0.6
CCDC88A-202ENST00000336838 TAF5LO75529 589 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 TRIM42Q8IWZ5 723 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 TEX11Q8IYF3 940 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 SNX29Q8TEQ0 813 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 FAM169AQ9Y6X4 670 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 A0A087WUV0 522 aaPredicted RBP11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 ATP2C2O75185 946 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 HIBADHP31937 336 aaKnown RBP11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 SUDS3Q9H7L9 328 aaPredicted RBP11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 ASIC3Q9UHC3 531 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 CPA1P15085 419 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 VSIG1Q86XK7 387 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 MRPL44Q9H9J2 332 aaKnown RBP11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 ARHGEF35A5YM69 484 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 SUN1O94901 812 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 HHATQ5VTY9 493 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 ZC3H12CQ9C0D7 883 aaKnown RBP11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 THAP9Q9H5L6 903 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 PRPF6O94906 941 aaKnown RBP11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 PCCAP05165 728 aaPredicted RBP11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 OR52Z1P0C646 297 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 KRT24Q2M2I5 525 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 CCDC105Q8IYK2 499 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 ARMCX3Q9UH62 379 aaPredicted RBP11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 ODF2LQ9ULJ1 636 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 RABGAP1Q9Y3P9 1069 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 CCDC89Q8N998 374 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 MIGA1Q8NAN2 632 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 TBC1D31Q96DN5 1066 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 TLDC2A0PJX2 215 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 BPIFB4P59827 614 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 SCRN1Q12765 414 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 PHF23Q9BUL5 403 aaPredicted RBP11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 CEP104O60308 925 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 CABP7Q86V35 215 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 ZC3H15Q8WU90 426 aaKnown RBP11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 OSBPL5Q9H0X9 879 aaPredicted RBP11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 VCX3AQ9NNX9 186 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 TAB2Q9NYJ8 693 aa11.32□□□□□ -0.6
CCDC88A-202ENST00000336838 KRIT1O00522 736 aa11.31□□□□□ -0.6
CCDC88A-202ENST00000336838 CASQ2O14958 399 aaPredicted RBP11.31□□□□□ -0.6
CCDC88A-202ENST00000336838 STRN3Q13033 797 aa11.31□□□□□ -0.6
CCDC88A-202ENST00000336838 DCAF8L1A6NGE4 600 aa11.31□□□□□ -0.6
CCDC88A-202ENST00000336838 VPS52Q8N1B4 723 aa11.31□□□□□ -0.6
CCDC88A-202ENST00000336838 CTTNBP2NLQ9P2B4 639 aa11.31□□□□□ -0.6
CCDC88A-202ENST00000336838 AOC3Q16853 763 aa11.31□□□□□ -0.6
CCDC88A-202ENST00000336838 HERC4Q5GLZ8 1057 aaPredicted RBP11.31□□□□□ -0.6
CCDC88A-202ENST00000336838 ALCAMQ13740 583 aa11.31□□□□□ -0.6
CCDC88A-202ENST00000336838 LRRC63Q05C16 580 aa11.31□□□□□ -0.6
CCDC88A-202ENST00000336838 ANKRD20A3Q5VUR7 823 aa11.31□□□□□ -0.6
CCDC88A-202ENST00000336838 RRAGAQ7L523 313 aa11.31□□□□□ -0.6
CCDC88A-202ENST00000336838 SLFN14P0C7P3 912 aa11.31□□□□□ -0.6
CCDC88A-202ENST00000336838 TXLNGQ9NUQ3 528 aa11.31□□□□□ -0.6
CCDC88A-202ENST00000336838 GAP43P17677 238 aa11.31□□□□□ -0.6
CCDC88A-202ENST00000336838 HSP90AA5PQ58FG0 334 aa11.31□□□□□ -0.6
CCDC88A-202ENST00000336838 ARHGEF28Q8N1W1 1705 aaKnown RBP11.3□□□□□ -0.6
CCDC88A-202ENST00000336838 MAPK8IP2Q13387 824 aaPredicted RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms