RNA–Protein interactions for RNA: ENST00000327028.8

VIPAS39-201, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5 BASIC

Gene VIPAS39, Length 2,614 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-201ENST00000327028 SEC63Q9UGP8 760 aaKnown RBP11.84□□□□□ -0.51
VIPAS39-201ENST00000327028 hCG_1984214I3L0E3 225 aa11.84□□□□□ -0.51
VIPAS39-201ENST00000327028 VCAM1P19320 739 aa11.84□□□□□ -0.51
VIPAS39-201ENST00000327028 STAT2P52630 851 aa11.84□□□□□ -0.51
VIPAS39-201ENST00000327028 FAM160B2Q86V87 743 aa11.84□□□□□ -0.51
VIPAS39-201ENST00000327028 ZNF713Q8N859 430 aaPredicted RBP11.84□□□□□ -0.51
VIPAS39-201ENST00000327028 C2orf69Q8N8R5 385 aa11.84□□□□□ -0.51
VIPAS39-201ENST00000327028 PIBF1Q8WXW3 757 aa11.84□□□□□ -0.51
VIPAS39-201ENST00000327028 PIGSQ96S52 555 aa11.84□□□□□ -0.51
VIPAS39-201ENST00000327028 FEM1BQ9UK73 627 aa11.84□□□□□ -0.51
VIPAS39-201ENST00000327028 F13A1P00488 732 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 XBP1P17861 261 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 HMGCS2P54868 508 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 IKQ13123 557 aaPredicted RBP11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 KRT40Q6A162 431 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 HOMER1Q86YM7 354 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 FAM177A1Q8N128 213 aaPredicted RBP11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 CHURC1Q8WUH1 139 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 CNKSR2Q8WXI2 1034 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 OTUD5Q96G74 571 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 SH3GLB2Q9NR46 395 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 KCNH4Q9UQ05 1017 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 PNMA6FA0A0J9YX94 578 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 CXCL11O14625 94 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 PRKCSHP14314 528 aaPredicted RBP11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 GUCY1B3Q02153 619 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 DGKZQ13574 1117 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 OTUD7BQ6GQQ9 843 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 VAT1LQ9HCJ6 419 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 GJB4Q9NTQ9 266 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 TMOD4Q9NZQ9 345 aa11.83□□□□□ -0.52
VIPAS39-201ENST00000327028 PASKQ96RG2 1323 aa11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 ZBTB5O15062 677 aa11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 FOXD4L5Q5VV16 416 aaPredicted RBP11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 WWC2Q6AWC2 1192 aa11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 SMC1BQ8NDV3 1235 aa11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 FOXD4L4Q8WXT5 416 aaPredicted RBP11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 TNPO1Q92973 898 aaKnown RBP11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 OPTNQ96CV9 577 aa11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 SHISA4Q96DD7 197 aa11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 BARHL2Q9NY43 387 aa11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 VPS54Q9P1Q0 977 aa11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 PRR12Q9ULL5 1215 aa11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 MYH15Q9Y2K3 1946 aa11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 MMP1P03956 469 aa11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 CDC37Q16543 378 aaPredicted RBP11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 CST9Q5W186 159 aa11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 HEATR3Q7Z4Q2 680 aa11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 GPKOWQ92917 476 aaPredicted RBP eCLIP11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 SLC10A4Q96EP9 437 aa11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 PHF20Q9BVI0 1012 aa11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 RPAP3Q9H6T3 665 aaPredicted RBP11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.82□□□□□ -0.52
VIPAS39-201ENST00000327028 A0A0G2JLL6 359 aaPredicted RBP11.81□□□□□ -0.52
VIPAS39-201ENST00000327028 STXBP3O00186 592 aa11.81□□□□□ -0.52
VIPAS39-201ENST00000327028 IRF6O14896 467 aa11.81□□□□□ -0.52
VIPAS39-201ENST00000327028 RESTQ13127 1097 aa11.81□□□□□ -0.52
VIPAS39-201ENST00000327028 PRRT2Q7Z6L0 340 aaPredicted RBP11.81□□□□□ -0.52
VIPAS39-201ENST00000327028 CCDC148Q8NFR7 591 aa11.81□□□□□ -0.52
VIPAS39-201ENST00000327028 SLF1Q9BQI6 1058 aa11.81□□□□□ -0.52
VIPAS39-201ENST00000327028 TANGO6Q9C0B7 1094 aa11.81□□□□□ -0.52
VIPAS39-201ENST00000327028 RLFQ13129 1914 aa11.81□□□□□ -0.52
VIPAS39-201ENST00000327028 QRICH1Q2TAL8 776 aa11.81□□□□□ -0.52
VIPAS39-201ENST00000327028 PPP1R18Q6NYC8 613 aa11.81□□□□□ -0.52
VIPAS39-201ENST00000327028 PROCA1Q8NCQ7 364 aaPredicted RBP11.81□□□□□ -0.52
VIPAS39-201ENST00000327028 RANBP17Q9H2T7 1088 aaKnown RBP11.81□□□□□ -0.52
VIPAS39-201ENST00000327028 ZSCAN16Q9H4T2 348 aaPredicted RBP11.81□□□□□ -0.52
VIPAS39-201ENST00000327028 KCNJ14Q9UNX9 436 aa11.81□□□□□ -0.52
VIPAS39-201ENST00000327028 PPP1R11O60927 126 aaPredicted RBP11.8□□□□□ -0.52
VIPAS39-201ENST00000327028 GJA5P36382 358 aa11.8□□□□□ -0.52
VIPAS39-201ENST00000327028 KIF23Q02241 960 aaPredicted RBP11.8□□□□□ -0.52
VIPAS39-201ENST00000327028 SAFBQ15424 915 aaKnown RBP eCLIP11.8□□□□□ -0.52
VIPAS39-201ENST00000327028 FERMT3Q86UX7 667 aa11.8□□□□□ -0.52
VIPAS39-201ENST00000327028 CCDC12Q8WUD4 166 aaPredicted RBP11.8□□□□□ -0.52
VIPAS39-201ENST00000327028 KIFC2Q96AC6 838 aa11.8□□□□□ -0.52
VIPAS39-201ENST00000327028 FBXO28Q9NVF7 368 aa11.8□□□□□ -0.52
VIPAS39-201ENST00000327028 ATP6V1DQ9Y5K8 247 aa11.8□□□□□ -0.52
VIPAS39-201ENST00000327028 CALML3P27482 149 aa11.8□□□□□ -0.52
VIPAS39-201ENST00000327028 MCTP1Q6DN14 999 aa11.8□□□□□ -0.52
VIPAS39-201ENST00000327028 TYW1BQ6NUM6 668 aa11.8□□□□□ -0.52
VIPAS39-201ENST00000327028 CLEC17AQ6ZS10 378 aa11.8□□□□□ -0.52
VIPAS39-201ENST00000327028 WNK4Q96J92 1243 aa11.8□□□□□ -0.52
VIPAS39-201ENST00000327028 PPP1R9AQ9ULJ8 1098 aa11.8□□□□□ -0.52
VIPAS39-201ENST00000327028 ESYT2A0FGR8 921 aa11.79□□□□□ -0.52
VIPAS39-201ENST00000327028 USP17L15C9J2P7 530 aa11.79□□□□□ -0.52
VIPAS39-201ENST00000327028 USP17L13C9JLJ4 530 aa11.79□□□□□ -0.52
VIPAS39-201ENST00000327028 USP17L11C9JVI0 530 aa11.79□□□□□ -0.52
VIPAS39-201ENST00000327028 USP17L18D6R9N7 530 aa11.79□□□□□ -0.52
VIPAS39-201ENST00000327028 USP17L22D6RA61 530 aa11.79□□□□□ -0.52
VIPAS39-201ENST00000327028 USP17L17D6RBQ6 530 aa11.79□□□□□ -0.52
VIPAS39-201ENST00000327028 USP17L19D6RCP7 530 aa11.79□□□□□ -0.52
VIPAS39-201ENST00000327028 USP17L20D6RJB6 530 aa11.79□□□□□ -0.52
VIPAS39-201ENST00000327028 FLOT1O75955 427 aa11.79□□□□□ -0.52
VIPAS39-201ENST00000327028 NAPAP54920 295 aa11.79□□□□□ -0.52
VIPAS39-201ENST00000327028 NLRP5P59047 1200 aa11.79□□□□□ -0.52
VIPAS39-201ENST00000327028 USP17L24Q0WX57 530 aa11.79□□□□□ -0.52
VIPAS39-201ENST00000327028 GALNT17Q6IS24 598 aa11.79□□□□□ -0.52
VIPAS39-201ENST00000327028 DIS3L2Q8IYB7 885 aaKnown RBP11.79□□□□□ -0.52
VIPAS39-201ENST00000327028 PRPF38AQ8NAV1 312 aaKnown RBP11.79□□□□□ -0.52
VIPAS39-201ENST00000327028 BRMS1Q9HCU9 246 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms