RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 PSMD6Q15008 389 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 DIXDC1Q155Q3 683 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 GEN1Q17RS7 908 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 RGS22Q8NE09 1264 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 NGDNQ8NEJ9 315 aaKnown RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 DDI1Q8WTU0 396 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 S100A1P23297 94 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 ATG16L1Q676U5 607 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 ARID3CA6NKF2 412 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 SPAG7O75391 227 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 TRHP20396 242 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 GNA11P29992 359 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 IFT88Q13099 833 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 NCAPG2Q86XI2 1143 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 CFAP61Q8NHU2 1237 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 NAPBQ9H115 298 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 ZHX3Q9H4I2 956 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 INTS9Q9NV88 658 aaKnown RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 AQRO60306 1485 aaKnown RBP eCLIP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 C16orf96A6NNT2 1141 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 LSM1O15116 133 aaKnown RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 IARSP41252 1262 aaKnown RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 ECE1P42892 770 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 LIG3P49916 1009 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 GUCY1B3Q02153 619 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 TBC1D10BQ4KMP7 808 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 SLC17A8Q8NDX2 589 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 NEUROD6Q96NK8 337 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 FAM204AQ9H8W3 233 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 PRDM1O75626 825 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 RHOXF2BP0C7M4 288 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 DDX5P17844 614 aaKnown RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 KRT15P19012 456 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 ZNF76P36508 570 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 CEP55Q53EZ4 464 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 POP5Q969H6 163 aaKnown RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 RHOXF2Q9BQY4 288 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 EPC1Q9H2F5 836 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 TRPC7Q9HCX4 862 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 GUCY1B2O75343 617 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 TUBA1BP68363 451 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 PDE4BQ07343 736 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 MED21Q13503 144 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 TUBA1AQ71U36 451 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 TCP11L2Q8N4U5 519 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 C17orf50Q8WW18 174 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 ABTB1Q969K4 478 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 RTL9Q8NET4 1388 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 YEATS2Q9ULM3 1422 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 TRIM27P14373 513 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 GNAT2P19087 354 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 TTC39AQ5SRH9 613 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 ZGPATQ8N5A5 531 aaKnown RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 F8W8V4 182 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 CSB-PGBD3P0DP91 1061 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 ACADSP16219 412 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 RECQLP46063 649 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 NUP107P57740 925 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 BNC1Q01954 994 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 TMED8Q6PL24 325 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 SYT10Q6XYQ8 523 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 KRT27Q7Z3Y8 459 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 USP40Q9NVE5 1235 aa5.29□□□□□ -1.56
CSMD3-201ENST00000297405 UBA2Q9UBT2 640 aaPredicted RBP5.29□□□□□ -1.56
CSMD3-201ENST00000297405 VCAM1P19320 739 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 ICA1Q05084 483 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 KLHL12Q53G59 568 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 GJC2Q5T442 439 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 TBC1D9Q6ZT07 1266 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 TRIML2Q8N7C3 387 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 AIDAQ96BJ3 306 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 IPO11Q9UI26 975 aaKnown RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 CLASP2O75122 1294 aaKnown RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 S100BP04271 92 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 SLFN5Q08AF3 891 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 CUL4BQ13620 913 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 TLK2Q86UE8 772 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 SYCP3Q8IZU3 236 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 IGSF22Q8N9C0 903 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 SCG3Q8WXD2 468 aaKnown RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 EFHD2Q96C19 240 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 RGL1Q9NZL6 768 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 FAM83GA6ND36 823 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 HGSO14964 777 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 SCG2P13521 617 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 SSFA2P28290 1259 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 POLE2P56282 527 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 MRPS9P82933 396 aaKnown RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 CAPRIN1Q14444 709 aaKnown RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 RPS6KA1Q15418 735 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 CCDC144BQ3MJ40 725 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 GJB2P29033 226 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 ELF1P32519 619 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 EPS8Q12929 822 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 PPP6R3Q5H9R7 873 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-201ENST00000297405 STX19Q8N4C7 294 aa5.28□□□□□ -1.56
CSMD3-201ENST00000297405 USP28Q96RU2 1077 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms