RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 CCDC50Q8IVM0 306 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 UBLCP1Q8WVY7 318 aaPredicted RBP11.33□□□□□ -0.6
CLDN1-201ENST00000295522 AGXT2Q9BYV1 514 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 A1CFQ9NQ94 594 aaKnown RBP11.33□□□□□ -0.6
CLDN1-201ENST00000295522 GGT7Q9UJ14 662 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 FAM205CA6NFA0 338 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 NEURL1BA8MQ27 555 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 PHF20L1A8MW92 1017 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 B4DLN1 442 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 TBC1D8BQ0IIM8 1120 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 SPRED3Q2MJR0 410 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 ALS2CLQ60I27 953 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 APOA5Q6Q788 366 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 TAX1BP1Q86VP1 789 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 SPDYE1Q8NFV5 336 aaPredicted RBP11.33□□□□□ -0.6
CLDN1-201ENST00000295522 ALS2CR12Q96Q35 445 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 CCDC113Q9H0I3 377 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 AGPAT5Q9NUQ2 364 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 GDAQ9Y2T3 454 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 FAM170AA1A519 330 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 SPAG1Q07617 926 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 DPYDQ12882 1025 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 GNPTABQ3T906 1256 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 CAPRIN2Q6IMN6 1127 aaKnown RBP11.33□□□□□ -0.6
CLDN1-201ENST00000295522 IFT20Q8IY31 132 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 CEP120Q8N960 986 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 OXER1Q8TDS5 423 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 PAGE5Q96GU1 130 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 IFIH1Q9BYX4 1025 aaKnown RBP11.33□□□□□ -0.6
CLDN1-201ENST00000295522 NHEJ1Q9H9Q4 299 aaPredicted RBP11.33□□□□□ -0.6
CLDN1-201ENST00000295522 FBXO2Q9UK22 296 aaPredicted RBP11.33□□□□□ -0.6
CLDN1-201ENST00000295522 CEP131Q9UPN4 1083 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 STK38LQ9Y2H1 464 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 PXDNLA1KZ92 1463 aa11.33□□□□□ -0.6
CLDN1-201ENST00000295522 A6NNZ2 444 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 GCOM1H8Y6P7 765 aaPredicted RBP11.32□□□□□ -0.6
CLDN1-201ENST00000295522 DNM1LO00429 736 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 MYZAPP0CAP1 466 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 PTPREP23469 700 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 KLK7P49862 253 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 SEMA3FQ13275 785 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 RBBP5Q15291 538 aaKnown RBP11.32□□□□□ -0.6
CLDN1-201ENST00000295522 TUBB8Q3ZCM7 444 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 TDRD12Q587J7 1177 aaKnown RBP11.32□□□□□ -0.6
CLDN1-201ENST00000295522 EMBQ6PCB8 327 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 HVCN1Q96D96 273 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 KRT12Q99456 494 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 RBM12Q9NTZ6 932 aaKnown RBP11.32□□□□□ -0.6
CLDN1-201ENST00000295522 PLAAQ9Y263 795 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 MYO5BQ9ULV0 1848 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 SETD1BQ9UPS6 1966 aaKnown RBP11.32□□□□□ -0.6
CLDN1-201ENST00000295522 TMCO5BA8MYB1 307 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 GPAA1O43292 621 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 ACTN4O43707 911 aaKnown RBP11.32□□□□□ -0.6
CLDN1-201ENST00000295522 RASSF9O75901 435 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 FAM107AO95990 144 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 SSR1P43307 286 aaKnown RBP11.32□□□□□ -0.6
CLDN1-201ENST00000295522 MTIF2P46199 727 aaKnown RBP11.32□□□□□ -0.6
CLDN1-201ENST00000295522 CCDC178Q5BJE1 867 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 RILPL1Q5EBL4 403 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 TCP11X2Q5H9J9 407 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 THEMIS2Q5TEJ8 643 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 LMBR1Q8WVP7 490 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 PUS7LQ9H0K6 701 aaKnown RBP11.32□□□□□ -0.6
CLDN1-201ENST00000295522 NOD2Q9HC29 1040 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 CAPN6Q9Y6Q1 641 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 CEP170BQ9Y4F5 1589 aaPredicted RBP11.32□□□□□ -0.6
CLDN1-201ENST00000295522 TRIM75PA6NK02 468 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 CAND2O75155 1236 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 IFFO1Q0D2I5 559 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 PSMD2Q13200 908 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 TRIM14Q14142 442 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 GKAP1Q5VSY0 366 aaPredicted RBP11.32□□□□□ -0.6
CLDN1-201ENST00000295522 APTXQ7Z2E3 356 aaKnown RBP11.32□□□□□ -0.6
CLDN1-201ENST00000295522 SELENOSQ9BQE4 189 aa11.32□□□□□ -0.6
CLDN1-201ENST00000295522 ACTR5Q9H9F9 607 aaPredicted RBP11.32□□□□□ -0.6
CLDN1-201ENST00000295522 UBN2Q6ZU65 1347 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 TLDC2A0PJX2 215 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 ZNF233A6NK53 670 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 SCTRP47872 440 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 PAK2Q13177 524 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 PAPD7Q5XG87 772 aaKnown RBP11.31□□□□□ -0.6
CLDN1-201ENST00000295522 CYB5R4Q7L1T6 521 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 C2CD5Q86YS7 1000 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 MB21D2Q8IYB1 491 aaPredicted RBP11.31□□□□□ -0.6
CLDN1-201ENST00000295522 SH3GL3Q99963 347 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 CLTCQ00610 1675 aaKnown RBP11.31□□□□□ -0.6
CLDN1-201ENST00000295522 GMNCA6NCL1 334 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 KIF3CO14782 793 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 DIAPH2O60879 1101 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 PLEKP08567 350 aaPredicted RBP11.31□□□□□ -0.6
CLDN1-201ENST00000295522 CTNNA1P35221 906 aaKnown RBP11.31□□□□□ -0.6
CLDN1-201ENST00000295522 TOB1P50616 345 aaPredicted RBP11.31□□□□□ -0.6
CLDN1-201ENST00000295522 QPCTQ16769 361 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 LRRC24Q50LG9 513 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 ARFGAP2Q8N6H7 521 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 CCDC63Q8NA47 563 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 KCNV2Q8TDN2 545 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 ATP6V1G3Q96LB4 118 aa11.31□□□□□ -0.6
CLDN1-201ENST00000295522 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms