RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 IL25Q9H293 177 aa17.11■□□□□ 0.33
HMGN3-201ENST00000275036 TSPY2A6NKD2 308 aa17.1■□□□□ 0.33
HMGN3-201ENST00000275036 RANBP6O60518 1105 aaKnown RBP17.1■□□□□ 0.33
HMGN3-201ENST00000275036 OLFML2BQ68BL8 750 aa17.1■□□□□ 0.33
HMGN3-201ENST00000275036 ABRAQ8N0Z2 381 aa17.1■□□□□ 0.33
HMGN3-201ENST00000275036 GMCL1P1Q8NEA9 526 aa17.1■□□□□ 0.33
HMGN3-201ENST00000275036 PRO3102Q9H379 93 aa17.1■□□□□ 0.33
HMGN3-201ENST00000275036 C11orf49Q9H6J7 331 aa17.1■□□□□ 0.33
HMGN3-201ENST00000275036 DIAPH3Q9NSV4 1193 aa17.1■□□□□ 0.33
HMGN3-201ENST00000275036 SYNPO2Q9UMS6 1093 aa17.1■□□□□ 0.33
HMGN3-201ENST00000275036 RIPK3Q9Y572 518 aa17.1■□□□□ 0.33
HMGN3-201ENST00000275036 TRIOBPQ9H2D6 2365 aa17.1■□□□□ 0.33
HMGN3-201ENST00000275036 EVI5O60447 810 aa17.09■□□□□ 0.33
HMGN3-201ENST00000275036 SLC25A27O95847 323 aa17.09■□□□□ 0.33
HMGN3-201ENST00000275036 PGK2P07205 417 aa17.09■□□□□ 0.33
HMGN3-201ENST00000275036 STAT3P40763 770 aa17.09■□□□□ 0.33
HMGN3-201ENST00000275036 NOVP48745 357 aa17.09■□□□□ 0.33
HMGN3-201ENST00000275036 SLFN13Q68D06 897 aa17.09■□□□□ 0.33
HMGN3-201ENST00000275036 TBC1D10CQ8IV04 446 aa17.09■□□□□ 0.33
HMGN3-201ENST00000275036 MAML3Q96JK9 1138 aa17.09■□□□□ 0.33
HMGN3-201ENST00000275036 RBM27Q9P2N5 1060 aaKnown RBP17.09■□□□□ 0.33
HMGN3-201ENST00000275036 DDX20Q9UHI6 824 aaKnown RBP17.09■□□□□ 0.33
HMGN3-201ENST00000275036 SZT2Q5T011 3432 aa17.08■□□□□ 0.33
HMGN3-201ENST00000275036 FCER1AP12319 257 aa17.08■□□□□ 0.32
HMGN3-201ENST00000275036 FXR1P51114 621 aaKnown RBP eCLIP17.08■□□□□ 0.32
HMGN3-201ENST00000275036 MFAP1P55081 439 aaKnown RBP17.08■□□□□ 0.32
HMGN3-201ENST00000275036 PRAMEF19Q5SWL8 479 aa17.08■□□□□ 0.32
HMGN3-201ENST00000275036 CHMP4CQ96CF2 233 aa17.08■□□□□ 0.32
HMGN3-201ENST00000275036 STX8Q9UNK0 236 aa17.08■□□□□ 0.32
HMGN3-201ENST00000275036 HIP1O00291 1037 aa17.07■□□□□ 0.32
HMGN3-201ENST00000275036 BMP3P12645 472 aa17.07■□□□□ 0.32
HMGN3-201ENST00000275036 CNGA1P29973 690 aa17.07■□□□□ 0.32
HMGN3-201ENST00000275036 RRP12Q5JTH9 1297 aaKnown RBP17.07■□□□□ 0.32
HMGN3-201ENST00000275036 SNRNP48Q6IEG0 339 aaKnown RBP17.07■□□□□ 0.32
HMGN3-201ENST00000275036 C7orf61Q8IZ16 206 aa17.07■□□□□ 0.32
HMGN3-201ENST00000275036 PRPF38AQ8NAV1 312 aaKnown RBP17.07■□□□□ 0.32
HMGN3-201ENST00000275036 STAG1Q8WVM7 1258 aa17.07■□□□□ 0.32
HMGN3-201ENST00000275036 KIFC2Q96AC6 838 aa17.07■□□□□ 0.32
HMGN3-201ENST00000275036 MMP19Q99542 508 aa17.07■□□□□ 0.32
HMGN3-201ENST00000275036 TOMM22Q9NS69 142 aa17.07■□□□□ 0.32
HMGN3-201ENST00000275036 NR2E3Q9Y5X4 410 aa17.07■□□□□ 0.32
HMGN3-201ENST00000275036 MCM3APO60318 1980 aa17.07■□□□□ 0.32
HMGN3-201ENST00000275036 NEDD4P46934 1319 aa17.06■□□□□ 0.32
HMGN3-201ENST00000275036 MCCP23508 829 aa17.06■□□□□ 0.32
HMGN3-201ENST00000275036 ZNF792Q3KQV3 632 aa17.06■□□□□ 0.32
HMGN3-201ENST00000275036 AKNAD1Q5T1N1 836 aa17.06■□□□□ 0.32
HMGN3-201ENST00000275036 ANO1Q5XXA6 986 aa17.06■□□□□ 0.32
HMGN3-201ENST00000275036 GMCL1Q96IK5 515 aa17.06■□□□□ 0.32
HMGN3-201ENST00000275036 TEX13BQ9BXU2 312 aa17.06■□□□□ 0.32
HMGN3-201ENST00000275036 SLC38A10Q9HBR0 1119 aa17.06■□□□□ 0.32
HMGN3-201ENST00000275036 RAVER2Q9HCJ3 691 aaKnown RBP17.06■□□□□ 0.32
HMGN3-201ENST00000275036 FEM1BQ9UK73 627 aa17.06■□□□□ 0.32
HMGN3-201ENST00000275036 LAMA3Q16787 3333 aa17.06■□□□□ 0.32
HMGN3-201ENST00000275036 TMEM232C9JQI7 657 aa17.05■□□□□ 0.32
HMGN3-201ENST00000275036 ATP2A1O14983 1001 aa17.05■□□□□ 0.32
HMGN3-201ENST00000275036 LRRC26Q2I0M4 334 aa17.05■□□□□ 0.32
HMGN3-201ENST00000275036 CPXCR1Q8N123 301 aa17.05■□□□□ 0.32
HMGN3-201ENST00000275036 DSCC1Q9BVC3 393 aa17.05■□□□□ 0.32
HMGN3-201ENST00000275036 TCP11L1Q9NUJ3 509 aa17.05■□□□□ 0.32
HMGN3-201ENST00000275036 ZMYND8Q9ULU4 1186 aaPredicted RBP17.05■□□□□ 0.32
HMGN3-201ENST00000275036 ZNF536O15090 1300 aa17.04■□□□□ 0.32
HMGN3-201ENST00000275036 TAL1P17542 331 aaPredicted RBP17.04■□□□□ 0.32
HMGN3-201ENST00000275036 SLC1A4P43007 532 aa17.04■□□□□ 0.32
HMGN3-201ENST00000275036 KCTD2Q14681 263 aa17.04■□□□□ 0.32
HMGN3-201ENST00000275036 PPP4R3BQ5MIZ7 849 aa17.04■□□□□ 0.32
HMGN3-201ENST00000275036 RCSD1Q6JBY9 416 aa17.04■□□□□ 0.32
HMGN3-201ENST00000275036 MFSD6Q6ZSS7 791 aa17.04■□□□□ 0.32
HMGN3-201ENST00000275036 KCTD1Q719H9 257 aa17.04■□□□□ 0.32
HMGN3-201ENST00000275036 DNAJC25-GNG10A0A024R161 153 aa17.03■□□□□ 0.32
HMGN3-201ENST00000275036 ZNF213O14771 459 aa17.03■□□□□ 0.32
HMGN3-201ENST00000275036 SEPT4O43236 478 aa17.03■□□□□ 0.32
HMGN3-201ENST00000275036 MSCO60682 206 aa17.03■□□□□ 0.32
HMGN3-201ENST00000275036 ZBED4O75132 1171 aa17.03■□□□□ 0.32
HMGN3-201ENST00000275036 SYN1P17600 705 aa17.03■□□□□ 0.32
HMGN3-201ENST00000275036 CHMLP26374 656 aa17.03■□□□□ 0.32
HMGN3-201ENST00000275036 SLC4A3P48751 1232 aa17.03■□□□□ 0.32
HMGN3-201ENST00000275036 FGD4Q96M96 766 aa17.03■□□□□ 0.32
HMGN3-201ENST00000275036 TMEM47Q9BQJ4 181 aa17.03■□□□□ 0.32
HMGN3-201ENST00000275036 TINF2Q9BSI4 451 aa17.03■□□□□ 0.32
HMGN3-201ENST00000275036 SLC5A4Q9NY91 659 aa17.03■□□□□ 0.32
HMGN3-201ENST00000275036 MTMR7Q9Y216 660 aa17.03■□□□□ 0.32
HMGN3-201ENST00000275036 PCP11498 1178 aaKnown RBP17.02■□□□□ 0.32
HMGN3-201ENST00000275036 COPB2P35606 906 aa17.02■□□□□ 0.32
HMGN3-201ENST00000275036 STAT2P52630 851 aa17.02■□□□□ 0.32
HMGN3-201ENST00000275036 SNAP25P60880 206 aa17.02■□□□□ 0.32
HMGN3-201ENST00000275036 GJC2Q5T442 439 aaPredicted RBP17.02■□□□□ 0.32
HMGN3-201ENST00000275036 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.02■□□□□ 0.32
HMGN3-201ENST00000275036 SKAP1Q86WV1 359 aa17.02■□□□□ 0.32
HMGN3-201ENST00000275036 LENG1Q96BZ8 264 aaPredicted RBP17.02■□□□□ 0.32
HMGN3-201ENST00000275036 ISY1Q9ULR0 285 aaKnown RBP17.02■□□□□ 0.32
HMGN3-201ENST00000275036 DIS3Q9Y2L1 958 aaKnown RBP17.02■□□□□ 0.32
HMGN3-201ENST00000275036 LCTP09848 1927 aa17.02■□□□□ 0.31
HMGN3-201ENST00000275036 DNM1LO00429 736 aa17.01■□□□□ 0.31
HMGN3-201ENST00000275036 PLA2G6O60733 806 aa17.01■□□□□ 0.31
HMGN3-201ENST00000275036 ZNF865P0CJ78 1059 aaPredicted RBP17.01■□□□□ 0.31
HMGN3-201ENST00000275036 TOP1P11387 765 aaKnown RBP17.01■□□□□ 0.31
HMGN3-201ENST00000275036 TTBK2Q6IQ55 1244 aa17.01■□□□□ 0.31
HMGN3-201ENST00000275036 FAM160B2Q86V87 743 aa17.01■□□□□ 0.31
HMGN3-201ENST00000275036 CHURC1Q8WUH1 139 aa17.01■□□□□ 0.31
HMGN3-201ENST00000275036 AGBL1Q96MI9 1066 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms