RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 PRKCSHP14314 528 aaPredicted RBP17.46■□□□□ 0.39
SF3B4-201ENST00000271628 PTGDRQ13258 359 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 ZNF174Q15697 407 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 DNTTIP2Q5QJE6 756 aaKnown RBP17.46■□□□□ 0.39
SF3B4-201ENST00000271628 SH3BP5LQ7L8J4 393 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 NIM1KQ8IY84 436 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 ZNF830Q96NB3 372 aaPredicted RBP17.46■□□□□ 0.39
SF3B4-201ENST00000271628 GMLQ99445 158 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 CSRNP2Q9H175 543 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 NYAP2Q9P242 653 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 TUBE1Q9UJT0 475 aa17.46■□□□□ 0.39
SF3B4-201ENST00000271628 ZBTB7AO95365 584 aa17.45■□□□□ 0.38
SF3B4-201ENST00000271628 GRIN1Q05586 938 aa17.45■□□□□ 0.38
SF3B4-201ENST00000271628 ZNF543Q08ER8 600 aa17.45■□□□□ 0.38
SF3B4-201ENST00000271628 IQCB1Q15051 598 aa17.45■□□□□ 0.38
SF3B4-201ENST00000271628 LONRF3Q496Y0 759 aa17.45■□□□□ 0.38
SF3B4-201ENST00000271628 SPECC1Q5M775 1068 aa17.45■□□□□ 0.38
SF3B4-201ENST00000271628 MTERF4Q7Z6M4 381 aaKnown RBP17.45■□□□□ 0.38
SF3B4-201ENST00000271628 HOMER1Q86YM7 354 aa17.45■□□□□ 0.38
SF3B4-201ENST00000271628 AGBL3Q8NEM8 1001 aa17.45■□□□□ 0.38
SF3B4-201ENST00000271628 UBA5Q9GZZ9 404 aa17.45■□□□□ 0.38
SF3B4-201ENST00000271628 VAT1LQ9HCJ6 419 aa17.45■□□□□ 0.38
SF3B4-201ENST00000271628 PCDHA6Q9UN73 950 aa17.45■□□□□ 0.38
SF3B4-201ENST00000271628 PCDHA8Q9Y5H6 950 aa17.45■□□□□ 0.38
SF3B4-201ENST00000271628 SIPA1L1O43166 1804 aa17.45■□□□□ 0.38
SF3B4-201ENST00000271628 SPDYE2BA6NHP3 402 aa17.44■□□□□ 0.38
SF3B4-201ENST00000271628 AP5Z1O43299 807 aa17.44■□□□□ 0.38
SF3B4-201ENST00000271628 SPDYE6P0CI01 402 aa17.44■□□□□ 0.38
SF3B4-201ENST00000271628 NLRP12P59046 1061 aa17.44■□□□□ 0.38
SF3B4-201ENST00000271628 DLGAP5Q15398 846 aa17.44■□□□□ 0.38
SF3B4-201ENST00000271628 NOM1Q5C9Z4 860 aaKnown RBP17.44■□□□□ 0.38
SF3B4-201ENST00000271628 DALRD3Q5D0E6 543 aaKnown RBP17.44■□□□□ 0.38
SF3B4-201ENST00000271628 ARL6IP4Q66PJ3 421 aaKnown RBP17.44■□□□□ 0.38
SF3B4-201ENST00000271628 C11orf57Q6ZUT1 292 aaPredicted RBP17.44■□□□□ 0.38
SF3B4-201ENST00000271628 TMEM179Q6ZVK1 233 aa17.44■□□□□ 0.38
SF3B4-201ENST00000271628 ERCC4Q92889 916 aaPredicted RBP17.44■□□□□ 0.38
SF3B4-201ENST00000271628 PIGSQ96S52 555 aa17.44■□□□□ 0.38
SF3B4-201ENST00000271628 BPIFA3Q9BQP9 254 aa17.44■□□□□ 0.38
SF3B4-201ENST00000271628 MYH4Q9Y623 1939 aa17.44■□□□□ 0.38
SF3B4-201ENST00000271628 ESYT2A0FGR8 921 aa17.44■□□□□ 0.38
SF3B4-201ENST00000271628 SMCO2A6NFE2 343 aa17.44■□□□□ 0.38
SF3B4-201ENST00000271628 POLR2DO15514 142 aaKnown RBP17.44■□□□□ 0.38
SF3B4-201ENST00000271628 RASGRP2Q7LDG7 609 aa17.44■□□□□ 0.38
SF3B4-201ENST00000271628 CPVLQ9H3G5 476 aa17.44■□□□□ 0.38
SF3B4-201ENST00000271628 HERC5Q9UII4 1024 aaKnown RBP17.44■□□□□ 0.38
SF3B4-201ENST00000271628 FRMPD2Q68DX3 1309 aaPredicted RBP17.44■□□□□ 0.38
SF3B4-201ENST00000271628 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.43■□□□□ 0.38
SF3B4-201ENST00000271628 ATP2B2Q01814 1243 aa17.43■□□□□ 0.38
SF3B4-201ENST00000271628 KRT25Q7Z3Z0 450 aa17.43■□□□□ 0.38
SF3B4-201ENST00000271628 PYM1Q9BRP8 204 aaKnown RBP17.43■□□□□ 0.38
SF3B4-201ENST00000271628 MCM7P33993 719 aa17.43■□□□□ 0.38
SF3B4-201ENST00000271628 MMP14P50281 582 aa17.43■□□□□ 0.38
SF3B4-201ENST00000271628 MYRIPQ8NFW9 859 aa17.43■□□□□ 0.38
SF3B4-201ENST00000271628 ATF5Q9Y2D1 282 aaPredicted RBP17.43■□□□□ 0.38
SF3B4-201ENST00000271628 LAD1O00515 517 aa17.42■□□□□ 0.38
SF3B4-201ENST00000271628 WNT7AO00755 349 aa17.42■□□□□ 0.38
SF3B4-201ENST00000271628 ABCB5Q2M3G0 1257 aa17.42■□□□□ 0.38
SF3B4-201ENST00000271628 CLEC10AQ8IUN9 316 aa17.42■□□□□ 0.38
SF3B4-201ENST00000271628 MTMR14Q8NCE2 650 aa17.42■□□□□ 0.38
SF3B4-201ENST00000271628 FAM151AQ8WW52 585 aa17.42■□□□□ 0.38
SF3B4-201ENST00000271628 CSRNP1Q96S65 589 aa17.42■□□□□ 0.38
SF3B4-201ENST00000271628 PNMA6FA0A0J9YX94 578 aa17.41■□□□□ 0.38
SF3B4-201ENST00000271628 EEF2P13639 858 aaKnown RBP17.41■□□□□ 0.38
SF3B4-201ENST00000271628 FKBP1CQ5VVH2 108 aa17.41■□□□□ 0.38
SF3B4-201ENST00000271628 KIAA1524Q8TCG1 905 aa17.41■□□□□ 0.38
SF3B4-201ENST00000271628 DCAF4Q8WV16 495 aa17.41■□□□□ 0.38
SF3B4-201ENST00000271628 JDP2Q8WYK2 163 aa17.41■□□□□ 0.38
SF3B4-201ENST00000271628 TAOK3Q9H2K8 898 aa17.41■□□□□ 0.38
SF3B4-201ENST00000271628 GPCPD1Q9NPB8 672 aa17.41■□□□□ 0.38
SF3B4-201ENST00000271628 VWA3AA6NCI4 1184 aa17.41■□□□□ 0.38
SF3B4-201ENST00000271628 ADAMTS3O15072 1205 aa17.41■□□□□ 0.38
SF3B4-201ENST00000271628 MDM2Q00987 491 aaPredicted RBP17.41■□□□□ 0.38
SF3B4-201ENST00000271628 NONOQ15233 471 aaKnown RBP eCLIP17.41■□□□□ 0.38
SF3B4-201ENST00000271628 RBM26Q5T8P6 1007 aaKnown RBP17.41■□□□□ 0.38
SF3B4-201ENST00000271628 PPP1R18Q6NYC8 613 aa17.41■□□□□ 0.38
SF3B4-201ENST00000271628 ADGRF4Q8IZF3 695 aa17.41■□□□□ 0.38
SF3B4-201ENST00000271628 RASGRP4Q8TDF6 673 aa17.41■□□□□ 0.38
SF3B4-201ENST00000271628 ZNF70Q9UC06 446 aaPredicted RBP17.41■□□□□ 0.38
SF3B4-201ENST00000271628 FAM196BA6NMK8 535 aa17.4■□□□□ 0.38
SF3B4-201ENST00000271628 MYO1BO43795 1136 aa17.4■□□□□ 0.38
SF3B4-201ENST00000271628 LONP1P36776 959 aaKnown RBP17.4■□□□□ 0.38
SF3B4-201ENST00000271628 ICA1Q05084 483 aa17.4■□□□□ 0.38
SF3B4-201ENST00000271628 PNOCQ13519 176 aa17.4■□□□□ 0.38
SF3B4-201ENST00000271628 POSTNQ15063 836 aa17.4■□□□□ 0.38
SF3B4-201ENST00000271628 CCDC96Q2M329 555 aa17.4■□□□□ 0.38
SF3B4-201ENST00000271628 DPCR1Q3MIW9 517 aa17.4■□□□□ 0.38
SF3B4-201ENST00000271628 SARM1Q6SZW1 724 aa17.4■□□□□ 0.38
SF3B4-201ENST00000271628 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.4■□□□□ 0.38
SF3B4-201ENST00000271628 DHX40Q8IX18 779 aaKnown RBP17.4■□□□□ 0.38
SF3B4-201ENST00000271628 SYMPKQ92797 1274 aaKnown RBP17.4■□□□□ 0.38
SF3B4-201ENST00000271628 JMJD4Q9H9V9 463 aa17.4■□□□□ 0.38
SF3B4-201ENST00000271628 SERTAD1Q9UHV2 236 aa17.4■□□□□ 0.38
SF3B4-201ENST00000271628 SYNPO2Q9UMS6 1093 aa17.4■□□□□ 0.38
SF3B4-201ENST00000271628 ZBTB12Q9Y330 459 aaPredicted RBP17.4■□□□□ 0.38
SF3B4-201ENST00000271628 COL4A5P29400 1685 aa17.4■□□□□ 0.38
SF3B4-201ENST00000271628 SMTNL1A8MU46 457 aa17.4■□□□□ 0.38
SF3B4-201ENST00000271628 SLURP2P0DP57 97 aa17.4■□□□□ 0.38
SF3B4-201ENST00000271628 SLC1A4P43007 532 aa17.4■□□□□ 0.38
SF3B4-201ENST00000271628 ORC2Q13416 577 aaPredicted RBP17.4■□□□□ 0.38
SF3B4-201ENST00000271628 SPDYE2Q495Y8 402 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms