RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 KLRC3Q07444 240 aa18.91■□□□□ 0.62
USP4-201ENST00000265560 BIN2Q9UBW5 565 aaPredicted RBP18.91■□□□□ 0.62
USP4-201ENST00000265560 ATRNL1Q5VV63 1379 aa18.91■□□□□ 0.62
USP4-201ENST00000265560 SMCO2A6NFE2 343 aa18.9■□□□□ 0.62
USP4-201ENST00000265560 TRIM75PA6NK02 468 aa18.9■□□□□ 0.62
USP4-201ENST00000265560 PLCB2Q00722 1185 aa18.9■□□□□ 0.62
USP4-201ENST00000265560 INF2Q27J81 1249 aa18.9■□□□□ 0.62
USP4-201ENST00000265560 TMEM179Q6ZVK1 233 aa18.9■□□□□ 0.62
USP4-201ENST00000265560 SMCHD1A6NHR9 2005 aa18.9■□□□□ 0.62
USP4-201ENST00000265560 PPP1R11O60927 126 aaPredicted RBP18.9■□□□□ 0.62
USP4-201ENST00000265560 KIAA1755Q5JYT7 1200 aa18.9■□□□□ 0.62
USP4-201ENST00000265560 JAKMIP3Q5VZ66 844 aa18.9■□□□□ 0.62
USP4-201ENST00000265560 TMEM260Q9NX78 707 aa18.9■□□□□ 0.62
USP4-201ENST00000265560 PCDHA4Q9UN74 947 aa18.9■□□□□ 0.62
USP4-201ENST00000265560 FZD9O00144 591 aa18.89■□□□□ 0.62
USP4-201ENST00000265560 NPM3O75607 178 aaKnown RBP18.89■□□□□ 0.62
USP4-201ENST00000265560 ZNF202O95125 648 aa18.89■□□□□ 0.61
USP4-201ENST00000265560 SNHG28P0DPA3 235 aa18.89■□□□□ 0.61
USP4-201ENST00000265560 DGKZQ13574 1117 aa18.89■□□□□ 0.61
USP4-201ENST00000265560 TTC38Q5R3I4 469 aa18.89■□□□□ 0.61
USP4-201ENST00000265560 UIMC1Q96RL1 719 aa18.89■□□□□ 0.61
USP4-201ENST00000265560 HACL1Q9UJ83 578 aa18.89■□□□□ 0.61
USP4-201ENST00000265560 PCDHA6Q9UN73 950 aa18.89■□□□□ 0.61
USP4-201ENST00000265560 PCDHA8Q9Y5H6 950 aa18.89■□□□□ 0.61
USP4-201ENST00000265560 CDC25AP30304 524 aa18.89■□□□□ 0.61
USP4-201ENST00000265560 NT5C2P49902 561 aa18.89■□□□□ 0.61
USP4-201ENST00000265560 ZBED3Q96IU2 234 aaPredicted RBP18.89■□□□□ 0.61
USP4-201ENST00000265560 FUCA2Q9BTY2 467 aa18.89■□□□□ 0.61
USP4-201ENST00000265560 RIOX1Q9H6W3 641 aa18.89■□□□□ 0.61
USP4-201ENST00000265560 BIN1O00499 593 aa18.88■□□□□ 0.61
USP4-201ENST00000265560 NDUFB10O96000 172 aa18.88■□□□□ 0.61
USP4-201ENST00000265560 TYRO3Q06418 890 aa18.88■□□□□ 0.61
USP4-201ENST00000265560 PTGDRQ13258 359 aa18.88■□□□□ 0.61
USP4-201ENST00000265560 ASPRV1Q53RT3 343 aa18.88■□□□□ 0.61
USP4-201ENST00000265560 KRI1Q8N9T8 703 aaKnown RBP18.88■□□□□ 0.61
USP4-201ENST00000265560 SYT17Q9BSW7 474 aa18.88■□□□□ 0.61
USP4-201ENST00000265560 EPS15P42566 896 aa18.88■□□□□ 0.61
USP4-201ENST00000265560 TRPM4Q8TD43 1214 aa18.88■□□□□ 0.61
USP4-201ENST00000265560 LZTS2Q9BRK4 669 aa18.88■□□□□ 0.61
USP4-201ENST00000265560 CSRNP2Q9H175 543 aa18.88■□□□□ 0.61
USP4-201ENST00000265560 FBXO2Q9UK22 296 aaPredicted RBP18.88■□□□□ 0.61
USP4-201ENST00000265560 CCDC194A0A1B0GVG4 234 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 CMA1P23946 247 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 ILDR2Q71H61 639 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 METTL16Q86W50 562 aaKnown RBP18.87■□□□□ 0.61
USP4-201ENST00000265560 EPSTI1Q96J88 318 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 A0A1W2PQ27 194 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 A0A1W2PQ64 194 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 A0A1W2PQD8 194 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 PPP6R2O75170 966 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 UBE2SQ16763 222 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 DNAJC25Q9H1X3 360 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 NYAP2Q9P242 653 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 VWA3AA6NCI4 1184 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 TMEM232C9JQI7 657 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 FOXN1O15353 648 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 DDNO94850 711 aaPredicted RBP18.87■□□□□ 0.61
USP4-201ENST00000265560 LETM1O95202 739 aaPredicted RBP18.87■□□□□ 0.61
USP4-201ENST00000265560 SYKP43405 635 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 PRKG1Q13976 671 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 KIF4BQ2VIQ3 1234 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 ANO6Q4KMQ2 910 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 NBPF12Q5TAG4 269 aaPredicted RBP18.87■□□□□ 0.61
USP4-201ENST00000265560 JMYQ8N9B5 988 aa18.87■□□□□ 0.61
USP4-201ENST00000265560 HERC5Q9UII4 1024 aaKnown RBP18.87■□□□□ 0.61
USP4-201ENST00000265560 CALML3P27482 149 aa18.86■□□□□ 0.61
USP4-201ENST00000265560 MTMR14Q8NCE2 650 aa18.86■□□□□ 0.61
USP4-201ENST00000265560 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.86■□□□□ 0.61
USP4-201ENST00000265560 ZBTB21Q9ULJ3 1066 aa18.86■□□□□ 0.61
USP4-201ENST00000265560 CCDC192P0DO97 292 aa18.86■□□□□ 0.61
USP4-201ENST00000265560 YBX3P16989 372 aaKnown RBP eCLIP18.86■□□□□ 0.61
USP4-201ENST00000265560 LONRF3Q496Y0 759 aa18.86■□□□□ 0.61
USP4-201ENST00000265560 DEFB129Q9H1M3 183 aa18.86■□□□□ 0.61
USP4-201ENST00000265560 NOL7Q9UMY1 257 aaKnown RBP18.86■□□□□ 0.61
USP4-201ENST00000265560 ZNF280AP59817 542 aaPredicted RBP18.85■□□□□ 0.61
USP4-201ENST00000265560 USH1GQ495M9 461 aa18.85■□□□□ 0.61
USP4-201ENST00000265560 ANGEL2Q5VTE6 544 aaKnown RBP18.85■□□□□ 0.61
USP4-201ENST00000265560 SASS6Q6UVJ0 657 aa18.85■□□□□ 0.61
USP4-201ENST00000265560 PTPREP23469 700 aa18.85■□□□□ 0.61
USP4-201ENST00000265560 LUZP1Q86V48 1076 aa18.85■□□□□ 0.61
USP4-201ENST00000265560 GRAMD1CQ8IYS0 662 aa18.85■□□□□ 0.61
USP4-201ENST00000265560 RGS22Q8NE09 1264 aa18.85■□□□□ 0.61
USP4-201ENST00000265560 GREB1LQ9C091 1923 aaPredicted RBP18.85■□□□□ 0.61
USP4-201ENST00000265560 POLR2AP24928 1970 aaKnown RBP18.85■□□□□ 0.61
USP4-201ENST00000265560 LETM2Q2VYF4 491 aa18.85■□□□□ 0.61
USP4-201ENST00000265560 CCDC148Q8NFR7 591 aa18.85■□□□□ 0.61
USP4-201ENST00000265560 MKL1Q969V6 931 aa18.85■□□□□ 0.61
USP4-201ENST00000265560 TEPSINQ96N21 525 aa18.85■□□□□ 0.61
USP4-201ENST00000265560 PGAP2Q9UHJ9 254 aa18.85■□□□□ 0.61
USP4-201ENST00000265560 KCNH3Q9ULD8 1083 aa18.85■□□□□ 0.61
USP4-201ENST00000265560 POLR2DO15514 142 aaKnown RBP18.84■□□□□ 0.61
USP4-201ENST00000265560 RESP18Q5W5W9 173 aa18.84■□□□□ 0.61
USP4-201ENST00000265560 ZMYND12Q9H0C1 365 aa18.84■□□□□ 0.61
USP4-201ENST00000265560 SH3GLB2Q9NR46 395 aa18.84■□□□□ 0.61
USP4-201ENST00000265560 PCNTO95613 3336 aa18.84■□□□□ 0.61
USP4-201ENST00000265560 M0R2N6 131 aa18.84■□□□□ 0.61
USP4-201ENST00000265560 CUTAO60888 179 aa18.84■□□□□ 0.61
USP4-201ENST00000265560 QRICH1Q2TAL8 776 aa18.84■□□□□ 0.61
USP4-201ENST00000265560 GPATCH4Q5T3I0 446 aaKnown RBP18.84■□□□□ 0.61
USP4-201ENST00000265560 FAM83AQ86UY5 434 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms