RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 CNGA4Q8IV77 575 aa10.29□□□□□ -0.76
MSH4-201ENST00000263187 FERMT2Q96AC1 680 aa10.29□□□□□ -0.76
MSH4-201ENST00000263187 TRIM47Q96LD4 638 aa10.29□□□□□ -0.76
MSH4-201ENST00000263187 RABEP2Q9H5N1 569 aa10.29□□□□□ -0.76
MSH4-201ENST00000263187 DCP1AQ9NPI6 582 aaPredicted RBP10.29□□□□□ -0.76
MSH4-201ENST00000263187 UBR2Q8IWV8 1755 aa10.29□□□□□ -0.76
MSH4-201ENST00000263187 COL1A1P02452 1464 aaPredicted RBP10.28□□□□□ -0.76
MSH4-201ENST00000263187 ECM29Q5VYK3 1845 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 TAF1P21675 1872 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 ZNF185O15231 689 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 PBX1P40424 430 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 DNA2P51530 1060 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 IRX5P78411 483 aaPredicted RBP10.28□□□□□ -0.76
MSH4-201ENST00000263187 PPARDQ03181 441 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 PTF1AQ7RTS3 328 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 CTAGE1Q96RT6 745 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 NAPGQ99747 312 aaPredicted RBP10.28□□□□□ -0.76
MSH4-201ENST00000263187 AGPAT5Q9NUQ2 364 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 SRP68Q9UHB9 627 aaKnown RBP10.28□□□□□ -0.76
MSH4-201ENST00000263187 FAN1Q9Y2M0 1017 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 FAM170AA1A519 330 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 CTAGE15A4D2H0 777 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 MYO1BO43795 1136 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 PARP1P09874 1014 aaKnown RBP10.28□□□□□ -0.76
MSH4-201ENST00000263187 CTAGE8P0CG41 777 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 MATR3P43243 847 aaKnown RBP eCLIP10.28□□□□□ -0.76
MSH4-201ENST00000263187 ATP2B2Q01814 1243 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 E2F4Q16254 413 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 DDB1Q16531 1140 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 CCDC178Q5BJE1 867 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 CTAGE6Q86UF2 777 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 CTAGE4Q8IX94 777 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 TNFRSF25Q93038 417 aa10.28□□□□□ -0.76
MSH4-201ENST00000263187 CCDC194A0A1B0GVG4 234 aa10.27□□□□□ -0.76
MSH4-201ENST00000263187 ARHGAP25P42331 645 aa10.27□□□□□ -0.76
MSH4-201ENST00000263187 ANKRD20A12PQ8NF67 263 aa10.27□□□□□ -0.76
MSH4-201ENST00000263187 SMCR8Q8TEV9 937 aaPredicted RBP10.27□□□□□ -0.76
MSH4-201ENST00000263187 LRRC15Q8TF66 581 aa10.27□□□□□ -0.76
MSH4-201ENST00000263187 RIN2Q8WYP3 895 aaPredicted RBP10.27□□□□□ -0.76
MSH4-201ENST00000263187 NSUN4Q96CB9 384 aaKnown RBP10.27□□□□□ -0.76
MSH4-201ENST00000263187 KAT14Q9H8E8 782 aa10.27□□□□□ -0.76
MSH4-201ENST00000263187 SOCS7O14512 581 aa10.27□□□□□ -0.77
MSH4-201ENST00000263187 ATP1A1P05023 1023 aaKnown RBP10.27□□□□□ -0.77
MSH4-201ENST00000263187 UBA7P41226 1012 aa10.27□□□□□ -0.77
MSH4-201ENST00000263187 USP5P45974 858 aa10.27□□□□□ -0.77
MSH4-201ENST00000263187 LETM2Q2VYF4 491 aa10.27□□□□□ -0.77
MSH4-201ENST00000263187 CCDC122Q5T0U0 273 aa10.27□□□□□ -0.77
MSH4-201ENST00000263187 FOXR1Q6PIV2 292 aa10.27□□□□□ -0.77
MSH4-201ENST00000263187 IRF2BP1Q8IU81 584 aa10.27□□□□□ -0.77
MSH4-201ENST00000263187 MKNK2Q9HBH9 465 aa10.27□□□□□ -0.77
MSH4-201ENST00000263187 LCMT1Q9UIC8 334 aa10.27□□□□□ -0.77
MSH4-201ENST00000263187 REXO2Q9Y3B8 237 aaKnown RBP10.27□□□□□ -0.77
MSH4-201ENST00000263187 EPN1Q9Y6I3 576 aaPredicted RBP10.27□□□□□ -0.77
MSH4-201ENST00000263187 GRIK5Q16478 980 aa10.27□□□□□ -0.77
MSH4-201ENST00000263187 BEND6Q5SZJ8 279 aaPredicted RBP10.27□□□□□ -0.77
MSH4-201ENST00000263187 CYP26C1Q6V0L0 522 aa10.27□□□□□ -0.77
MSH4-201ENST00000263187 KRT26Q7Z3Y9 468 aa10.27□□□□□ -0.77
MSH4-201ENST00000263187 KIAA1328Q86T90 577 aa10.27□□□□□ -0.77
MSH4-201ENST00000263187 BLIDQ8IZY5 108 aa10.27□□□□□ -0.77
MSH4-201ENST00000263187 FCER1AP12319 257 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 TRIM21P19474 475 aaKnown RBP10.26□□□□□ -0.77
MSH4-201ENST00000263187 DZIP1Q86YF9 867 aaKnown RBP10.26□□□□□ -0.77
MSH4-201ENST00000263187 PNMA1Q8ND90 353 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 RBM28Q9NW13 759 aaKnown RBP10.26□□□□□ -0.77
MSH4-201ENST00000263187 SMARCAL1Q9NZC9 954 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 CALCOCO1Q9P1Z2 691 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 MYO6Q9UM54 1294 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 MYH8P13535 1937 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 PLEKHG2Q9H7P9 1386 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 RCCD1A6NED2 376 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 TRIM66O15016 1216 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 GTPBP6O43824 516 aaPredicted RBP10.26□□□□□ -0.77
MSH4-201ENST00000263187 NDUFA10O95299 355 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 PLEKP08567 350 aaPredicted RBP10.26□□□□□ -0.77
MSH4-201ENST00000263187 ZSCAN26Q16670 478 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 DTHD1Q6ZMT9 781 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.26□□□□□ -0.77
MSH4-201ENST00000263187 TMTC1Q8IUR5 882 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 MAPKAPK5Q8IW41 473 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 ANKRD13CQ8N6S4 541 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 CEP112Q8N8E3 955 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 MARCH10Q8NA82 808 aaPredicted RBP10.26□□□□□ -0.77
MSH4-201ENST00000263187 CAGE1Q8TC20 777 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 MMS19Q96T76 1030 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 CRNKL1Q9BZJ0 848 aaKnown RBP10.26□□□□□ -0.77
MSH4-201ENST00000263187 LACRTQ9GZZ8 138 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 IL17RBQ9NRM6 502 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 RWDD2AQ9UIY3 292 aa10.26□□□□□ -0.77
MSH4-201ENST00000263187 LUC7L2Q9Y383 392 aaKnown RBP10.26□□□□□ -0.77
MSH4-201ENST00000263187 DISP2A7MBM2 1401 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 CCDC151A5D8V7 595 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 LRRIQ3A6PVS8 624 aaPredicted RBP10.25□□□□□ -0.77
MSH4-201ENST00000263187 CAPN2P17655 700 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 ENOX2Q16206 610 aaKnown RBP10.25□□□□□ -0.77
MSH4-201ENST00000263187 PFKFB3Q16875 520 aaPredicted RBP10.25□□□□□ -0.77
MSH4-201ENST00000263187 TSR1Q2NL82 804 aaKnown RBP10.25□□□□□ -0.77
MSH4-201ENST00000263187 ZNF658Q5TYW1 1059 aaPredicted RBP10.25□□□□□ -0.77
MSH4-201ENST00000263187 TBC1D9BQ66K14 1250 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 RCSD1Q6JBY9 416 aa10.25□□□□□ -0.77
MSH4-201ENST00000263187 TGFBRAP1Q8WUH2 860 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms