RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 PCDHA7Q9UN72 937 aa21.09■□□□□ 0.97
UPF1-201ENST00000262803 FGAP02671 866 aa21.08■□□□□ 0.97
UPF1-201ENST00000262803 RPS6KA1Q15418 735 aa21.08■□□□□ 0.97
UPF1-201ENST00000262803 HADHQ16836 314 aaKnown RBP21.08■□□□□ 0.97
UPF1-201ENST00000262803 CCDC24Q8N4L8 307 aa21.08■□□□□ 0.97
UPF1-201ENST00000262803 FAM81BQ96LP2 452 aa21.08■□□□□ 0.97
UPF1-201ENST00000262803 ASIC3Q9UHC3 531 aa21.08■□□□□ 0.97
UPF1-201ENST00000262803 YEATS2Q9ULM3 1422 aa21.08■□□□□ 0.97
UPF1-201ENST00000262803 SMCO2A6NFE2 343 aa21.08■□□□□ 0.97
UPF1-201ENST00000262803 hCG_1984214I3L0E3 225 aa21.08■□□□□ 0.97
UPF1-201ENST00000262803 SLC12A2P55011 1212 aa21.08■□□□□ 0.97
UPF1-201ENST00000262803 RAD51AP2Q09MP3 1159 aa21.08■□□□□ 0.97
UPF1-201ENST00000262803 ADCK5Q3MIX3 580 aa21.08■□□□□ 0.97
UPF1-201ENST00000262803 MUM1L1Q5H9M0 696 aa21.08■□□□□ 0.97
UPF1-201ENST00000262803 ZNF713Q8N859 430 aaPredicted RBP21.08■□□□□ 0.97
UPF1-201ENST00000262803 VCXQ9H320 206 aa21.08■□□□□ 0.97
UPF1-201ENST00000262803 PSDA5PKW4 1024 aaPredicted RBP21.08■□□□□ 0.97
UPF1-201ENST00000262803 POLR2BP30876 1174 aaKnown RBP21.08■□□□□ 0.97
UPF1-201ENST00000262803 ZBTB38Q8NAP3 1195 aaPredicted RBP21.08■□□□□ 0.97
UPF1-201ENST00000262803 TEKT3Q9BXF9 490 aa21.08■□□□□ 0.97
UPF1-201ENST00000262803 TRIM31Q9BZY9 425 aa21.08■□□□□ 0.97
UPF1-201ENST00000262803 FAM207AQ9NSI2 230 aaPredicted RBP21.08■□□□□ 0.97
UPF1-201ENST00000262803 DCPSQ96C86 337 aaKnown RBP21.08■□□□□ 0.96
UPF1-201ENST00000262803 MRFAP1L1Q96HT8 127 aa21.08■□□□□ 0.96
UPF1-201ENST00000262803 ZSCAN10Q96SZ4 725 aaPredicted RBP21.08■□□□□ 0.96
UPF1-201ENST00000262803 TACC3Q9Y6A5 838 aa21.08■□□□□ 0.96
UPF1-201ENST00000262803 WDR17Q8IZU2 1322 aa21.08■□□□□ 0.96
UPF1-201ENST00000262803 ATP11AP98196 1134 aa21.08■□□□□ 0.96
UPF1-201ENST00000262803 TFDP1Q14186 410 aa21.08■□□□□ 0.96
UPF1-201ENST00000262803 ZMYM6O95789 1325 aa21.07■□□□□ 0.96
UPF1-201ENST00000262803 ADGBQ8N7X0 1667 aa21.07■□□□□ 0.96
UPF1-201ENST00000262803 KRT19P08727 400 aa21.07■□□□□ 0.96
UPF1-201ENST00000262803 ZYXQ15942 572 aaKnown RBP21.07■□□□□ 0.96
UPF1-201ENST00000262803 FANCBQ8NB91 859 aa21.07■□□□□ 0.96
UPF1-201ENST00000262803 LRRC24Q50LG9 513 aa21.07■□□□□ 0.96
UPF1-201ENST00000262803 SPOUT1Q5T280 376 aaKnown RBP21.07■□□□□ 0.96
UPF1-201ENST00000262803 CSRNP1Q96S65 589 aa21.07■□□□□ 0.96
UPF1-201ENST00000262803 ERVK-7P63135 1459 aa21.07■□□□□ 0.96
UPF1-201ENST00000262803 VCX3BQ9H321 246 aa21.07■□□□□ 0.96
UPF1-201ENST00000262803 COPRSQ9NQ92 184 aa21.07■□□□□ 0.96
UPF1-201ENST00000262803 ADCY9O60503 1353 aa21.07■□□□□ 0.96
UPF1-201ENST00000262803 CD2BP2O95400 341 aaKnown RBP21.07■□□□□ 0.96
UPF1-201ENST00000262803 HSPA1LP34931 641 aa21.07■□□□□ 0.96
UPF1-201ENST00000262803 USP14P54578 494 aa21.07■□□□□ 0.96
UPF1-201ENST00000262803 USH1GQ495M9 461 aa21.07■□□□□ 0.96
UPF1-201ENST00000262803 KLHL7Q8IXQ5 586 aa21.07■□□□□ 0.96
UPF1-201ENST00000262803 CCDC89Q8N998 374 aa21.07■□□□□ 0.96
UPF1-201ENST00000262803 DDX17Q92841 729 aaKnown RBP21.07■□□□□ 0.96
UPF1-201ENST00000262803 UIMC1Q96RL1 719 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 IFIH1Q9BYX4 1025 aaKnown RBP21.06■□□□□ 0.96
UPF1-201ENST00000262803 GPR108Q9NPR9 543 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 ARHGEF37A1IGU5 675 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 LAD1O00515 517 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 CUL4BQ13620 913 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 NEDD9Q14511 834 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 HHATQ5VTY9 493 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 CCDC62Q6P9F0 684 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 IFT122Q9HBG6 1241 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 LEMD3Q9Y2U8 911 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 TNNI1P19237 187 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 OAS2P29728 719 aaKnown RBP21.06■□□□□ 0.96
UPF1-201ENST00000262803 RRAGAQ7L523 313 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 MYOCDQ8IZQ8 938 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 BLIDQ8IZY5 108 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 OR8K1Q8NGG5 319 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 RUNDC3BQ96NL0 473 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 PDIA3P30101 505 aaKnown RBP21.06■□□□□ 0.96
UPF1-201ENST00000262803 GBP1P32455 592 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 PPP2R5AQ15172 486 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 TYW1BQ6NUM6 668 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 ABCA5Q8WWZ7 1642 aa21.06■□□□□ 0.96
UPF1-201ENST00000262803 DDX39AO00148 427 aaKnown RBP21.05■□□□□ 0.96
UPF1-201ENST00000262803 XRCC5P13010 732 aaKnown RBP21.05■□□□□ 0.96
UPF1-201ENST00000262803 ZNF827Q17R98 1081 aa21.05■□□□□ 0.96
UPF1-201ENST00000262803 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.05■□□□□ 0.964e-7■■■□□ 18.4
UPF1-201ENST00000262803 NLRC4Q9NPP4 1024 aa21.05■□□□□ 0.96
UPF1-201ENST00000262803 AATKQ6ZMQ8 1374 aa21.05■□□□□ 0.96
UPF1-201ENST00000262803 CCDC160A6NGH7 325 aa21.05■□□□□ 0.96
UPF1-201ENST00000262803 BTBD18B2RXH4 712 aa21.05■□□□□ 0.96
UPF1-201ENST00000262803 PHBP35232 272 aa21.05■□□□□ 0.96
UPF1-201ENST00000262803 STAT1P42224 750 aa21.05■□□□□ 0.96
UPF1-201ENST00000262803 SH2D4BQ5SQS7 431 aa21.05■□□□□ 0.96
UPF1-201ENST00000262803 PEX26Q7Z412 305 aa21.05■□□□□ 0.96
UPF1-201ENST00000262803 DESI2Q9BSY9 194 aa21.05■□□□□ 0.96
UPF1-201ENST00000262803 SCRN1Q12765 414 aa21.05■□□□□ 0.96
UPF1-201ENST00000262803 C2CD5Q86YS7 1000 aa21.05■□□□□ 0.96
UPF1-201ENST00000262803 CUEDC2Q9H467 287 aa21.05■□□□□ 0.96
UPF1-201ENST00000262803 RBM6P78332 1123 aaKnown RBP21.05■□□□□ 0.96
UPF1-201ENST00000262803 LRRC8AQ8IWT6 810 aa21.05■□□□□ 0.96
UPF1-201ENST00000262803 BBOF1Q8ND07 529 aa21.05■□□□□ 0.96
UPF1-201ENST00000262803 PSTPIP2Q9H939 334 aa21.05■□□□□ 0.96
UPF1-201ENST00000262803 TNKSO95271 1327 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 LIG4P49917 911 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 NDUFA8P51970 172 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 FBXO11Q86XK2 927 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 SULF1Q8IWU6 871 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 RPUSD2Q8IZ73 545 aaKnown RBP21.04■□□□□ 0.96
UPF1-201ENST00000262803 AMFRQ9UKV5 643 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 GINS2Q9Y248 185 aa21.04■□□□□ 0.96
UPF1-201ENST00000262803 COL4A3BPQ9Y5P4 624 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms