RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 RABGGTAQ92696 567 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 CHP1Q99653 195 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 ANKZF1Q9H8Y5 726 aa11.36□□□□□ -0.59
LIG3-201ENST00000262327 BCCIPQ9P287 314 aaKnown RBP eCLIP11.36□□□□□ -0.59
LIG3-201ENST00000262327 PP2D1A8MPX8 630 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 ENC1O14682 589 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 CLGNO14967 610 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 TPM1P09493 284 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 GNAT2P19087 354 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 NLRP5P59047 1200 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 FUT2Q10981 343 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 NCAPH2Q6IBW4 605 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 SRBD1Q8N5C6 995 aaKnown RBP11.35□□□□□ -0.59
LIG3-201ENST00000262327 GPKOWQ92917 476 aaPredicted RBP eCLIP11.35□□□□□ -0.59
LIG3-201ENST00000262327 PANX2Q96RD6 677 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 PDE11AQ9HCR9 933 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 GEMIN8Q9NWZ8 242 aaKnown RBP11.35□□□□□ -0.59
LIG3-201ENST00000262327 FEZ2Q9UHY8 353 aaPredicted RBP11.35□□□□□ -0.59
LIG3-201ENST00000262327 LOC102724159A0A0B4J2E5 919 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 KLRK1P26718 216 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 LMAN1P49257 510 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 PWP2Q15269 919 aaKnown RBP11.35□□□□□ -0.59
LIG3-201ENST00000262327 NPY5RQ15761 445 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 CDKAL1Q5VV42 579 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 SRGAP1Q7Z6B7 1085 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 TFCP2L1Q9NZI6 479 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 GUCA1BQ9UMX6 200 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 PNPLA7Q6ZV29 1317 aa11.35□□□□□ -0.59
LIG3-201ENST00000262327 TM4SF1P30408 202 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 SH3RF1Q7Z6J0 888 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 RASSF8Q8NHQ8 419 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 ZNF384Q8TF68 577 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 NLRP3Q96P20 1036 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 YY1AP1Q9H869 796 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 ABCB6Q9NP58 842 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 HDAC6Q9UBN7 1215 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 KRT9P35527 623 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 PBX1P40424 430 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 TROAPQ12815 778 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 NOA1Q8NC60 698 aaKnown RBP11.34□□□□□ -0.59
LIG3-201ENST00000262327 NELFBQ8WX92 580 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 GDAP1L1Q96MZ0 367 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 TSPYL1Q9H0U9 437 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 CDC23Q9UJX2 597 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 MYH2Q9UKX2 1941 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 CTAGE9A4FU28 777 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 UBXN1Q04323 297 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 JAKMIP3Q5VZ66 844 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 IQCA1Q86XH1 822 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 ELOA2Q8IYF1 753 aaPredicted RBP11.34□□□□□ -0.59
LIG3-201ENST00000262327 CAMKK2Q96RR4 588 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 RIOK1Q9BRS2 568 aaKnown RBP11.34□□□□□ -0.59
LIG3-201ENST00000262327 VPS18Q9P253 973 aa11.34□□□□□ -0.59
LIG3-201ENST00000262327 PRPF3O43395 683 aaKnown RBP11.33□□□□□ -0.6
LIG3-201ENST00000262327 COPB1P53618 953 aaKnown RBP11.33□□□□□ -0.6
LIG3-201ENST00000262327 VSNL1P62760 191 aa11.33□□□□□ -0.6
LIG3-201ENST00000262327 GSDMAQ96QA5 445 aa11.33□□□□□ -0.6
LIG3-201ENST00000262327 BRMS1Q9HCU9 246 aa11.33□□□□□ -0.6
LIG3-201ENST00000262327 SRGAP2O75044 1071 aa11.33□□□□□ -0.6
LIG3-201ENST00000262327 TNNT3P45378 269 aaPredicted RBP11.33□□□□□ -0.6
LIG3-201ENST00000262327 PMS1P54277 932 aaKnown RBP11.33□□□□□ -0.6
LIG3-201ENST00000262327 SKIDA1Q1XH10 827 aa11.33□□□□□ -0.6
LIG3-201ENST00000262327 CTR9Q6PD62 1173 aa11.33□□□□□ -0.6
LIG3-201ENST00000262327 RASGRP2Q7LDG7 609 aa11.33□□□□□ -0.6
LIG3-201ENST00000262327 SLC51AQ86UW1 340 aa11.33□□□□□ -0.6
LIG3-201ENST00000262327 ABHD10Q9NUJ1 306 aa11.33□□□□□ -0.6
LIG3-201ENST00000262327 ADAM21Q9UKJ8 722 aa11.33□□□□□ -0.6
LIG3-201ENST00000262327 KCNJ18B7U540 433 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 ZMYND10O75800 440 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 PRCPP42785 496 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 KCNJ12Q14500 433 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 TMTC3Q6ZXV5 915 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 NLGN1Q8N2Q7 840 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 CNBD1Q8NA66 436 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 CAPZA3Q96KX2 299 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 UBXN6Q9BZV1 441 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 PAK1Q13153 545 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 CNGA4Q8IV77 575 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 ANKRD18AQ8IVF6 992 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 IQUBQ8NA54 791 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 CTCFLQ8NI51 663 aaPredicted RBP11.32□□□□□ -0.6
LIG3-201ENST00000262327 FERMT2Q96AC1 680 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 CPVLQ9H3G5 476 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 ERCC3P19447 782 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 ARHGAP25P42331 645 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 ATP2C1P98194 919 aaPredicted RBP11.32□□□□□ -0.6
LIG3-201ENST00000262327 SF3B2Q13435 895 aaKnown RBP11.32□□□□□ -0.6
LIG3-201ENST00000262327 E2F4Q16254 413 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 BEND6Q5SZJ8 279 aaPredicted RBP11.32□□□□□ -0.6
LIG3-201ENST00000262327 COL23A1Q86Y22 540 aaPredicted RBP11.32□□□□□ -0.6
LIG3-201ENST00000262327 TNFRSF25Q93038 417 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 CTAGE1Q96RT6 745 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 EFCC1Q9HA90 598 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 FAM205AQ6ZU69 1335 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 CNTNAP5Q8WYK1 1306 aa11.32□□□□□ -0.6
LIG3-201ENST00000262327 COL4A1P02462 1669 aa11.31□□□□□ -0.6
LIG3-201ENST00000262327 MYH8P13535 1937 aa11.31□□□□□ -0.6
LIG3-201ENST00000262327 CHD4Q14839 1912 aa11.31□□□□□ -0.6
LIG3-201ENST00000262327 BAZ2AQ9UIF9 1905 aaKnown RBP11.31□□□□□ -0.6
LIG3-201ENST00000262327 CCDC151A5D8V7 595 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms