RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 USP17L5A8MUK1 530 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 UQCRHP07919 91 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 SKILP12757 684 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 CUL4BQ13620 913 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 DNTTIP2Q5QJE6 756 aaKnown RBP21.76■■□□□ 1.07
YBX3-201ENST00000228251 MSL1Q68DK7 614 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 TMC6Q7Z403 805 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 CCDC150Q8NCX0 1101 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 TEKT1Q969V4 418 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 CCDC34Q96HJ3 373 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 ZDHHC15Q96MV8 337 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 PYM1Q9BRP8 204 aaKnown RBP21.76■■□□□ 1.07
YBX3-201ENST00000228251 SERPINB13Q9UIV8 391 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 MTMR7Q9Y216 660 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 CCDC194A0A1B0GVG4 234 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 CBFA2T2O43439 604 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 SCNN1DP51172 638 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 C2CD5Q86YS7 1000 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 IQUBQ8NA54 791 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 EHD4Q9H223 541 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 TMEM60Q9H2L4 133 aa21.76■■□□□ 1.07
YBX3-201ENST00000228251 GTF2F1P35269 517 aaKnown RBP eCLIP21.75■■□□□ 1.07
YBX3-201ENST00000228251 AFMP43652 599 aa21.75■■□□□ 1.07
YBX3-201ENST00000228251 UBASH3AP57075 661 aa21.75■■□□□ 1.07
YBX3-201ENST00000228251 DHX8Q14562 1220 aaKnown RBP21.75■■□□□ 1.07
YBX3-201ENST00000228251 VSTM4Q8IW00 320 aa21.75■■□□□ 1.07
YBX3-201ENST00000228251 RRP36Q96EU6 259 aaKnown RBP21.75■■□□□ 1.07
YBX3-201ENST00000228251 KCNQ5Q9NR82 932 aa21.75■■□□□ 1.07
YBX3-201ENST00000228251 CD44P16070 742 aaKnown RBP21.74■■□□□ 1.07
YBX3-201ENST00000228251 CASP1P29466 404 aa21.74■■□□□ 1.07
YBX3-201ENST00000228251 PRPHP41219 470 aa21.74■■□□□ 1.07
YBX3-201ENST00000228251 CRKP46108 304 aa21.74■■□□□ 1.07
YBX3-201ENST00000228251 KCNJ6P48051 423 aa21.74■■□□□ 1.07
YBX3-201ENST00000228251 INF2Q27J81 1249 aa21.74■■□□□ 1.07
YBX3-201ENST00000228251 DACT2Q5SW24 774 aa21.74■■□□□ 1.07
YBX3-201ENST00000228251 CCDC12Q8WUD4 166 aaPredicted RBP21.74■■□□□ 1.07
YBX3-201ENST00000228251 C7orf43Q8WVR3 580 aa21.74■■□□□ 1.07
YBX3-201ENST00000228251 PIGSQ96S52 555 aa21.74■■□□□ 1.07
YBX3-201ENST00000228251 NFE2L3Q9Y4A8 694 aa21.74■■□□□ 1.07
YBX3-201ENST00000228251 hCG_1984214I3L0E3 225 aa21.74■■□□□ 1.07
YBX3-201ENST00000228251 LAD1O00515 517 aa21.74■■□□□ 1.07
YBX3-201ENST00000228251 HDLBPQ00341 1268 aaKnown RBP21.74■■□□□ 1.07
YBX3-201ENST00000228251 NFIAQ12857 509 aa21.74■■□□□ 1.07
YBX3-201ENST00000228251 ASPRV1Q53RT3 343 aa21.74■■□□□ 1.07
YBX3-201ENST00000228251 STRIP1Q5VSL9 837 aa21.74■■□□□ 1.07
YBX3-201ENST00000228251 KRT25Q7Z3Z0 450 aa21.74■■□□□ 1.07
YBX3-201ENST00000228251 ZNF713Q8N859 430 aaPredicted RBP21.74■■□□□ 1.07
YBX3-201ENST00000228251 ZNF622Q969S3 477 aaKnown RBP eCLIP21.74■■□□□ 1.072e-15■□□□□ 9.4
YBX3-201ENST00000228251 DBNDD1Q9H9R9 158 aa21.74■■□□□ 1.07
YBX3-201ENST00000228251 ARFGEF1Q9Y6D6 1849 aa21.73■■□□□ 1.07
YBX3-201ENST00000228251 PPP1R3GB7ZBB8 358 aa21.73■■□□□ 1.07
YBX3-201ENST00000228251 NAPAP54920 295 aa21.73■■□□□ 1.07
YBX3-201ENST00000228251 GTPBP6O43824 516 aaPredicted RBP21.72■■□□□ 1.07
YBX3-201ENST00000228251 NAALADL2Q58DX5 795 aa21.72■■□□□ 1.07
YBX3-201ENST00000228251 APTXQ7Z2E3 356 aaKnown RBP21.72■■□□□ 1.07
YBX3-201ENST00000228251 TRMT44Q8IYL2 757 aaKnown RBP21.72■■□□□ 1.07
YBX3-201ENST00000228251 DNAJC18Q9H819 358 aa21.72■■□□□ 1.07
YBX3-201ENST00000228251 SMCO2A6NFE2 343 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 USP27XA6NNY8 438 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 TMEM232C9JQI7 657 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 H0YIN7 160 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 DYNC1I1O14576 645 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 NPM3O75607 178 aaKnown RBP21.71■■□□□ 1.07
YBX3-201ENST00000228251 TTLL1O95922 423 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 SERPINC1P01008 464 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 GNA11P29992 359 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 TBX2Q13207 712 aaPredicted RBP21.71■■□□□ 1.07
YBX3-201ENST00000228251 NYAP1Q6ZVC0 841 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 CLEC10AQ8IUN9 316 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 LRRC47Q8N1G4 583 aaKnown RBP21.71■■□□□ 1.07
YBX3-201ENST00000228251 CCSER1Q9C0I3 900 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 TMX4Q9H1E5 349 aaPredicted RBP21.71■■□□□ 1.07
YBX3-201ENST00000228251 C6orf50Q9HD87 102 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 RXRBP28702 533 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 ZNF543Q08ER8 600 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 ZFPM1Q8IX07 1006 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 IDI2Q9BXS1 227 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 UBA5Q9GZZ9 404 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 TMX1Q9H3N1 280 aa21.71■■□□□ 1.07
YBX3-201ENST00000228251 ORC2Q13416 577 aaPredicted RBP21.7■■□□□ 1.06
YBX3-201ENST00000228251 NONOQ15233 471 aaKnown RBP eCLIP21.7■■□□□ 1.06
YBX3-201ENST00000228251 CFAP100Q494V2 611 aa21.7■■□□□ 1.06
YBX3-201ENST00000228251 CDKAL1Q5VV42 579 aa21.7■■□□□ 1.06
YBX3-201ENST00000228251 DTHD1Q6ZMT9 781 aa21.7■■□□□ 1.06
YBX3-201ENST00000228251 HOMER1Q86YM7 354 aa21.7■■□□□ 1.06
YBX3-201ENST00000228251 CCAR2Q8N163 923 aaKnown RBP21.7■■□□□ 1.06
YBX3-201ENST00000228251 DISC1Q9NRI5 854 aa21.7■■□□□ 1.06
YBX3-201ENST00000228251 SAMSN1Q9NSI8 373 aaKnown RBP21.7■■□□□ 1.06
YBX3-201ENST00000228251 SEC63Q9UGP8 760 aaKnown RBP21.7■■□□□ 1.06
YBX3-201ENST00000228251 PCDHAC2Q9Y5I4 1007 aa21.7■■□□□ 1.06
YBX3-201ENST00000228251 ECE2O60344 883 aa21.69■■□□□ 1.06
YBX3-201ENST00000228251 SFPQP23246 707 aaKnown RBP eCLIP21.69■■□□□ 1.06
YBX3-201ENST00000228251 SPATA1Q5VX52 437 aa21.69■■□□□ 1.06
YBX3-201ENST00000228251 FAM198AQ9UFP1 575 aa21.69■■□□□ 1.06
YBX3-201ENST00000228251 FRMPD2Q68DX3 1309 aaPredicted RBP21.69■■□□□ 1.06
YBX3-201ENST00000228251 EDIL3O43854 480 aa21.69■■□□□ 1.06
YBX3-201ENST00000228251 HLA-DOAP06340 250 aa21.69■■□□□ 1.06
YBX3-201ENST00000228251 CDC25AP30304 524 aa21.69■■□□□ 1.06
YBX3-201ENST00000228251 STAMQ92783 540 aa21.69■■□□□ 1.06
YBX3-201ENST00000228251 MTMR8Q96EF0 704 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms