RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 FAM129AQ9BZQ8 928 aa6.65□□□□□ -1.34
VPS13D-201ENST00000011700 ATP8B3O60423 1300 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 TRAF5O00463 557 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 CTNNA1P35221 906 aaKnown RBP6.65□□□□□ -1.35
VPS13D-201ENST00000011700 MYO1EQ12965 1108 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 MED21Q13503 144 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 PCGF5Q86SE9 256 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 REXO1Q8N1G1 1221 aaKnown RBP6.65□□□□□ -1.35
VPS13D-201ENST00000011700 OLFM3Q96PB7 478 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 IL1RAPL2Q9NP60 686 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 ZNF500O60304 480 aaPredicted RBP6.65□□□□□ -1.35
VPS13D-201ENST00000011700 PABPC4Q13310 644 aaKnown RBP eCLIP6.65□□□□□ -1.35
VPS13D-201ENST00000011700 OTUB1Q96FW1 271 aaPredicted RBP6.65□□□□□ -1.35
VPS13D-201ENST00000011700 CDHR1Q96JP9 859 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 TRIM56Q9BRZ2 755 aaKnown RBP6.65□□□□□ -1.35
VPS13D-201ENST00000011700 ARHGAP10A1A4S6 786 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 DYNC1I2Q13409 638 aaKnown RBP6.65□□□□□ -1.35
VPS13D-201ENST00000011700 CCDC105Q8IYK2 499 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 RABEP2Q9H5N1 569 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 NPATQ14207 1427 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 YTHDC2Q9H6S0 1430 aaKnown RBP6.65□□□□□ -1.35
VPS13D-201ENST00000011700 LDHBP07195 334 aaKnown RBP6.65□□□□□ -1.35
VPS13D-201ENST00000011700 HDAC4P56524 1084 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 POSTNQ15063 836 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 PUM3Q15397 648 aaKnown RBP6.65□□□□□ -1.35
VPS13D-201ENST00000011700 ATG16L1Q676U5 607 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 TMTC3Q6ZXV5 915 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 ANKRD35Q8N283 1001 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 CSGALNACT2Q8N6G5 542 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 CARD6Q9BX69 1037 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 PICK1Q9NRD5 415 aa6.65□□□□□ -1.35
VPS13D-201ENST00000011700 QRICH2Q9H0J4 1663 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 SURF1Q15526 300 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 YY1AP1Q9H869 796 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 SDSP20132 328 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 ATP8B2P98198 1209 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 BIRC3Q13489 604 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 MPRIPQ6WCQ1 1025 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 CPLX3Q8WVH0 158 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 ABCA8O94911 1581 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 FRMD3A2A2Y4 597 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 PODXLO00592 558 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 DMP1Q13316 513 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-201ENST00000011700 TMCC1O94876 653 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 SYF2O95926 243 aaKnown RBP6.64□□□□□ -1.35
VPS13D-201ENST00000011700 KRT4P19013 534 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 KRT71Q3SY84 523 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 EMBQ6PCB8 327 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 Q6ZUG5 572 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 OR8K1Q8NGG5 319 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.64□□□□□ -1.35
VPS13D-201ENST00000011700 WDR17Q8IZU2 1322 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 RPAP1Q9BWH6 1393 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-201ENST00000011700 A2MP01023 1474 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 CCT2P78371 535 aaKnown RBP6.64□□□□□ -1.35
VPS13D-201ENST00000011700 TMC4Q7Z404 712 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 ZMYND15Q9H091 742 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 ANAPC5Q9UJX4 755 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 ADAMTS12P58397 1594 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 GUCY1B3Q02153 619 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 RAPGEF1Q13905 1077 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 BRIP1Q9BX63 1249 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 USP19O94966 1318 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 TBC1D8O95759 1140 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 S100BP04271 92 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-201ENST00000011700 ZSCAN20P17040 1043 aaPredicted RBP6.64□□□□□ -1.35
VPS13D-201ENST00000011700 TMOD1P28289 359 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 EPHB4P54760 987 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 TBCCQ15814 346 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 CALCRLQ16602 461 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 RNF207Q6ZRF8 634 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 DCAF5Q96JK2 942 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 VEZTQ9HBM0 779 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 RBM8AQ9Y5S9 174 aaKnown RBP6.64□□□□□ -1.35
VPS13D-201ENST00000011700 WDR62O43379 1518 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 ADCY10Q96PN6 1610 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 ACTN1P12814 892 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 GCFC2P16383 781 aaKnown RBP6.64□□□□□ -1.35
VPS13D-201ENST00000011700 SERPINB4P48594 390 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 ZSCAN26Q16670 478 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 ADALQ6DHV7 355 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 CAPS2Q9BXY5 557 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 TMEM51Q9NW97 253 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 SENP1Q9P0U3 644 aa6.64□□□□□ -1.35
VPS13D-201ENST00000011700 RIMS2Q9UQ26 1411 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 KRT9P35527 623 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 PBKQ96KB5 322 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 CNPY3Q9BT09 278 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 AZI2Q9H6S1 392 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 PLEKHG1Q9ULL1 1385 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 H7C0S8 307 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 CEP85Q6P2H3 762 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 MRPL47Q9HD33 250 aaKnown RBP6.63□□□□□ -1.35
VPS13D-201ENST00000011700 ARPP21Q9UBL0 812 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-201ENST00000011700 PACSIN2Q9UNF0 486 aaPredicted RBP6.63□□□□□ -1.35
VPS13D-201ENST00000011700 ERBB4Q15303 1308 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 BIN1O00499 593 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 LAMB3Q13751 1172 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 MAML3Q96JK9 1138 aa6.63□□□□□ -1.35
VPS13D-201ENST00000011700 ZC3H12CQ9C0D7 883 aaKnown RBP6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 326.9 ms