RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 KIAA0753Q2KHM9 967 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 IYDQ6PHW0 289 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 BLOC1S2Q6QNY1 142 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 CCDC25Q86WR0 208 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 CACTINQ8WUQ7 758 aaKnown RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 RMDN2Q96LZ7 410 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SELENOOQ9BVL4 669 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 TSSK1BQ9BXA7 367 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 DRC3Q9H069 523 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 AKNAQ7Z591 1439 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 MIA3Q5JRA6 1907 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 A0A1B0GVL5 298 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 NUTM2FA1L443 756 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SMIM23A6NLE4 172 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF263O14978 683 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 RGL2O15211 777 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 CA4P22748 312 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 AAK1Q2M2I8 961 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 TMEM259Q4ZIN3 620 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 CNGA4Q8IV77 575 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 BBOF1Q8ND07 529 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 PAWRQ96IZ0 340 aaKnown RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 FOPNLQ96NB1 174 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 NDEL1Q9GZM8 345 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 DACT1Q9NYF0 836 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 FHOD3Q2V2M9 1422 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ATP8B3O60423 1300 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 GOLGA8TH3BQL2 631 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 TXNDC9O14530 226 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 INPP4BO15327 924 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF189O75820 626 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 TBC1D8O95759 1140 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 GOLGA8HP0CJ92 632 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 RARSP54136 660 aaKnown RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SKP1P63208 163 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 BASP1P80723 227 aaKnown RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ATP8B2P98198 1209 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 NIM1KQ8IY84 436 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 MIEF2Q96C03 454 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SPAG5Q96R06 1193 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 CARD9Q9H257 536 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 F8P00451 2351 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 PLXNB1O43157 2135 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 C6P13671 934 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 NBPF6Q5VWK0 638 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 TMC6Q7Z403 805 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 FLCNQ8NFG4 579 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 NBPF4Q96M43 638 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 PLCB1Q9NQ66 1216 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 PIKFYVEQ9Y2I7 2098 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 CTAGE15A4D2H0 777 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 I3L4J1 428 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 MOCS3O95396 460 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 ALDH1A1P00352 501 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 CTAGE8P0CG41 777 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 NOP14P78316 857 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 PSMD2Q13200 908 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 KANK4Q5T7N3 995 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 MAP3K21Q5TCX8 1036 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 OOSP2Q86WS3 158 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 CTAGE4Q8IX94 777 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 ENOX1Q8TC92 643 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 ZSWIM4Q9H7M6 989 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 HCN3Q9P1Z3 774 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 AFG3L2Q9Y4W6 797 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 KANSL1LA0AUZ9 987 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 ALDH1A2O94788 518 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 KRT13P13646 458 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 MDM2Q00987 491 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 SRSF11Q05519 484 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 LARP1BQ659C4 914 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 PHLDB3Q6NSJ2 640 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 CDCA7LQ96GN5 454 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 AP5M1Q9H0R1 490 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 PI4K2BG5E9Z4 385 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 KRT37O76014 449 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 MYL1P05976 194 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 KRT3P12035 628 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 PHEXP78562 749 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 RILPL1Q5EBL4 403 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 THOC7Q6I9Y2 204 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 PI4K2BQ8TCG2 481 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF830Q96NB3 372 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 GAS2L1Q99501 681 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 KDM4CQ9H3R0 1056 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 YY1AP1Q9H869 796 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 TSPYL4Q9UJ04 414 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 PACSIN3Q9UKS6 424 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 EXOC7Q9UPT5 735 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 SNX9Q9Y5X1 595 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 SORL1Q92673 2214 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 TDP2O95551 362 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 LDHBP07195 334 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 SKILP12757 684 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 GNG11P61952 73 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 RNASELQ05823 741 aaKnown RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 PDE4DQ08499 809 aa3.05□□□□□ -1.92
SCN1A-219ENST00000641575 ZKSCAN8Q15776 578 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-219ENST00000641575 VPS52Q8N1B4 723 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms