RNA–Protein interactions for RNA: ENST00000640652.1

SCN3A-210, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 8,825 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-210ENST00000640652 DNM2P50570 870 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 STX17P56962 302 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 PPFIA1Q13136 1202 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 E4F1Q66K89 784 aaPredicted RBP6.23□□□□□ -1.41
SCN3A-210ENST00000640652 HAUS4Q9H6D7 363 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 MCM9Q9NXL9 1143 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 PNPLA7Q6ZV29 1317 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 CCDC172P0C7W6 258 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 ODF2Q5BJF6 829 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 TRMT44Q8IYL2 757 aaKnown RBP6.23□□□□□ -1.41
SCN3A-210ENST00000640652 CLSTN1O94985 981 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 ST3GAL1Q11201 340 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 RASGRF1Q13972 1273 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 LONRF3Q496Y0 759 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 NBPF14Q5TI25 921 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 PUS3Q9BZE2 481 aaKnown RBP6.23□□□□□ -1.41
SCN3A-210ENST00000640652 TUBE1Q9UJT0 475 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 GOLGA6L10A0A0M3HER8 536 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 USP27XA6NNY8 438 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 CCNT1O60563 726 aaKnown RBP6.23□□□□□ -1.41
SCN3A-210ENST00000640652 PTGDRQ13258 359 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 PIK3AP1Q6ZUJ8 805 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 METTL16Q86W50 562 aaKnown RBP6.23□□□□□ -1.41
SCN3A-210ENST00000640652 NEK11Q8NG66 645 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 CLIC6Q96NY7 704 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.23□□□□□ -1.41
SCN3A-210ENST00000640652 MTMR7Q9Y216 660 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 SBF2Q86WG5 1849 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 SCN7AQ01118 1682 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 GOLGA6L7A0A1B0GV03 622 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 PRPF3O43395 683 aaKnown RBP6.23□□□□□ -1.41
SCN3A-210ENST00000640652 ARID5BQ14865 1188 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 ZNF174Q15697 407 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 SPECC1Q5M775 1068 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 TBC1D10CQ8IV04 446 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 CRACR2BQ8N4Y2 399 aaPredicted RBP6.23□□□□□ -1.41
SCN3A-210ENST00000640652 OR8K1Q8NGG5 319 aa6.23□□□□□ -1.41
SCN3A-210ENST00000640652 STRBPQ96SI9 672 aaKnown RBP6.23□□□□□ -1.41
SCN3A-210ENST00000640652 PUF60Q9UHX1 559 aaKnown RBP6.23□□□□□ -1.41
SCN3A-210ENST00000640652 V9GY48 417 aaPredicted RBP6.23□□□□□ -1.41
SCN3A-210ENST00000640652 BTAF1O14981 1849 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 GOLGA6BA6NDN3 693 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 KRT9P35527 623 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 TDRD12Q587J7 1177 aaKnown RBP6.22□□□□□ -1.41
SCN3A-210ENST00000640652 REXO1Q8N1G1 1221 aaKnown RBP6.22□□□□□ -1.41
SCN3A-210ENST00000640652 ISCA1Q9BUE6 129 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 COL5A3P25940 1745 aaPredicted RBP6.22□□□□□ -1.41
SCN3A-210ENST00000640652 A0A087WWV3 80 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 RPN1P04843 607 aaKnown RBP6.22□□□□□ -1.41
SCN3A-210ENST00000640652 PARP1P09874 1014 aaKnown RBP6.22□□□□□ -1.41
SCN3A-210ENST00000640652 PTPREP23469 700 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 B4GALNT4Q76KP1 1039 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 CENPHQ9H3R5 247 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 MFAP3LO75121 409 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 TOGARAM2Q6ZUX3 1019 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 CSGALNACT2Q8N6G5 542 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 RPGRQ92834 1020 aaKnown RBP6.22□□□□□ -1.41
SCN3A-210ENST00000640652 NOX5Q96PH1 765 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 A0A1B0GTH6 734 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 EBAG9O00559 213 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 RAD21O60216 631 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 ZSCAN26Q16670 478 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 KRT25Q7Z3Z0 450 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 PPM1EQ8WY54 764 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 SERTAD1Q9UHV2 236 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 CROCCQ5TZA2 2017 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 LDHBP07195 334 aaKnown RBP6.22□□□□□ -1.41
SCN3A-210ENST00000640652 NT5DC1Q5TFE4 455 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 FNBP4Q8N3X1 1017 aaPredicted RBP6.22□□□□□ -1.41
SCN3A-210ENST00000640652 SETDB2Q96T68 719 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 CCDC87Q9NVE4 849 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 HPS5Q9UPZ3 1129 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 GOLGA6CA6NDK9 693 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 NBPF26B4DH59 902 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 KIF28PB7ZC32 967 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 GOLGA6DP0CG33 693 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 CASP14P31944 242 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 CLUL1Q15846 466 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 CCDC40Q4G0X9 1142 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 NBPF10Q6P3W6 841 aaKnown RBP6.22□□□□□ -1.41
SCN3A-210ENST00000640652 CCDC170Q8IYT3 715 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 NBPF15Q8N660 670 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 TTLL11Q8NHH1 800 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 WDR66Q8TBY9 1149 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 SECISBP2LQ93073 1101 aaKnown RBP6.22□□□□□ -1.41
SCN3A-210ENST00000640652 DHTKD1Q96HY7 919 aaPredicted RBP6.22□□□□□ -1.41
SCN3A-210ENST00000640652 NLRP3Q96P20 1036 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 GOLGA6AQ9NYA3 693 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 RIPOR2Q9Y4F9 1068 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 STK24Q9Y6E0 443 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 NHSL1Q5SYE7 1610 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 IFT20Q8IY31 132 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 HELBQ8NG08 1087 aaPredicted RBP6.22□□□□□ -1.41
SCN3A-210ENST00000640652 SELENOOQ9BVL4 669 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 SLAIN2Q9P270 581 aa6.22□□□□□ -1.41
SCN3A-210ENST00000640652 ITIH6Q6UXX5 1313 aa6.21□□□□□ -1.41
SCN3A-210ENST00000640652 DDB1Q16531 1140 aa6.21□□□□□ -1.41
SCN3A-210ENST00000640652 RIC1Q4ADV7 1423 aa6.21□□□□□ -1.41
SCN3A-210ENST00000640652 ZNF658Q5TYW1 1059 aaPredicted RBP6.21□□□□□ -1.41
SCN3A-210ENST00000640652 GBP6Q6ZN66 633 aa6.21□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms