RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 IGHA2P01877 340 aa18.11■□□□□ 0.49
SYNE2-228ENST00000639659 TLE2Q04725 743 aa18.11■□□□□ 0.49
SYNE2-228ENST00000639659 TMEM132BQ14DG7 1078 aa18.11■□□□□ 0.49
SYNE2-228ENST00000639659 TRIM43Q96BQ3 446 aaPredicted RBP18.11■□□□□ 0.49
SYNE2-228ENST00000639659 LENG1Q96BZ8 264 aaPredicted RBP18.11■□□□□ 0.49
SYNE2-228ENST00000639659 RNPC3Q96LT9 517 aaKnown RBP18.11■□□□□ 0.49
SYNE2-228ENST00000639659 SEMA6BQ9H3T3 888 aa18.11■□□□□ 0.49
SYNE2-228ENST00000639659 ZNFX1Q9P2E3 1918 aaKnown RBP18.11■□□□□ 0.49
SYNE2-228ENST00000639659 PARP14Q460N5 1801 aa18.1■□□□□ 0.49
SYNE2-228ENST00000639659 TCRBV5S4A2TA0A5A2 114 aa18.1■□□□□ 0.49
SYNE2-228ENST00000639659 SMIM22K7EJ46 135 aa18.1■□□□□ 0.49
SYNE2-228ENST00000639659 WDR46O15213 610 aaKnown RBP18.1■□□□□ 0.49
SYNE2-228ENST00000639659 ABRAQ8N0Z2 381 aa18.1■□□□□ 0.49
SYNE2-228ENST00000639659 FBXO28Q9NVF7 368 aa18.1■□□□□ 0.49
SYNE2-228ENST00000639659 TMX2Q9Y320 296 aa18.1■□□□□ 0.49
SYNE2-228ENST00000639659 EYSQ5T1H1 3165 aa18.1■□□□□ 0.49
SYNE2-228ENST00000639659 SLC25A27O95847 323 aa18.09■□□□□ 0.49
SYNE2-228ENST00000639659 FOSL2P15408 326 aa18.09■□□□□ 0.49
SYNE2-228ENST00000639659 SLC4A3P48751 1232 aa18.09■□□□□ 0.49
SYNE2-228ENST00000639659 KCTD2Q14681 263 aa18.09■□□□□ 0.49
SYNE2-228ENST00000639659 SNX17Q15036 470 aa18.09■□□□□ 0.49
SYNE2-228ENST00000639659 RNF180Q86T96 592 aa18.09■□□□□ 0.49
SYNE2-228ENST00000639659 KIF1BPQ96EK5 621 aa18.09■□□□□ 0.49
SYNE2-228ENST00000639659 DDRGK1Q96HY6 314 aa18.09■□□□□ 0.49
SYNE2-228ENST00000639659 BOLA2Q9H3K6 86 aa18.09■□□□□ 0.49
SYNE2-228ENST00000639659 PAG1Q9NWQ8 432 aa18.09■□□□□ 0.49
SYNE2-228ENST00000639659 SMCHD1A6NHR9 2005 aa18.09■□□□□ 0.49
SYNE2-228ENST00000639659 PLXNA1Q9UIW2 1896 aa18.09■□□□□ 0.49
SYNE2-228ENST00000639659 CLTBP09497 229 aa18.08■□□□□ 0.48
SYNE2-228ENST00000639659 EEF2P13639 858 aaKnown RBP18.08■□□□□ 0.48
SYNE2-228ENST00000639659 RAG1P15918 1043 aa18.08■□□□□ 0.48
SYNE2-228ENST00000639659 TAL1P17542 331 aaPredicted RBP18.08■□□□□ 0.48
SYNE2-228ENST00000639659 CDK8P49336 464 aa18.08■□□□□ 0.48
SYNE2-228ENST00000639659 SIAH1Q8IUQ4 282 aa18.08■□□□□ 0.48
SYNE2-228ENST00000639659 STK11IPQ8N1F8 1099 aa18.08■□□□□ 0.48
SYNE2-228ENST00000639659 TTYH1Q9H313 450 aaPredicted RBP18.08■□□□□ 0.48
SYNE2-228ENST00000639659 USP17L12C9JPN9 530 aa18.07■□□□□ 0.48
SYNE2-228ENST00000639659 USP17L21D6R901 530 aa18.07■□□□□ 0.48
SYNE2-228ENST00000639659 CHGBP05060 677 aa18.07■□□□□ 0.48
SYNE2-228ENST00000639659 SMAD3P84022 425 aaKnown RBP18.07■□□□□ 0.48
SYNE2-228ENST00000639659 FAM83BQ5T0W9 1011 aa18.07■□□□□ 0.48
SYNE2-228ENST00000639659 TINF2Q9BSI4 451 aa18.07■□□□□ 0.48
SYNE2-228ENST00000639659 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.07■□□□□ 0.48
SYNE2-228ENST00000639659 GOPCQ9HD26 462 aa18.07■□□□□ 0.48
SYNE2-228ENST00000639659 ATP8A2Q9NTI2 1148 aa18.07■□□□□ 0.48
SYNE2-228ENST00000639659 PHF24Q9UPV7 400 aa18.07■□□□□ 0.48
SYNE2-228ENST00000639659 TACC3Q9Y6A5 838 aa18.07■□□□□ 0.48
SYNE2-228ENST00000639659 A0A1W2PQ45 241 aaPredicted RBP18.06■□□□□ 0.48
SYNE2-228ENST00000639659 A0A1W2PQY0 241 aa18.06■□□□□ 0.48
SYNE2-228ENST00000639659 ITGB8P26012 769 aa18.06■□□□□ 0.48
SYNE2-228ENST00000639659 ADD2P35612 726 aa18.06■□□□□ 0.48
SYNE2-228ENST00000639659 STAT3P40763 770 aa18.06■□□□□ 0.48
SYNE2-228ENST00000639659 EPHB4P54760 987 aa18.06■□□□□ 0.48
SYNE2-228ENST00000639659 RIOX2Q8IUF8 465 aa18.06■□□□□ 0.48
SYNE2-228ENST00000639659 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.06■□□□□ 0.48
SYNE2-228ENST00000639659 CCDC17Q96LX7 622 aa18.06■□□□□ 0.48
SYNE2-228ENST00000639659 TMEM39AQ9NV64 488 aa18.06■□□□□ 0.48
SYNE2-228ENST00000639659 CNPY2Q9Y2B0 182 aa18.06■□□□□ 0.48
SYNE2-228ENST00000639659 SLC4A4Q9Y6R1 1079 aa18.06■□□□□ 0.48
SYNE2-228ENST00000639659 AKR1A1P14550 325 aa18.05■□□□□ 0.48
SYNE2-228ENST00000639659 FPGSQ05932 587 aa18.05■□□□□ 0.48
SYNE2-228ENST00000639659 C12orf60Q5U649 245 aa18.05■□□□□ 0.48
SYNE2-228ENST00000639659 NUP88Q99567 741 aaPredicted RBP18.05■□□□□ 0.48
SYNE2-228ENST00000639659 ZHX1Q9UKY1 873 aaPredicted RBP18.05■□□□□ 0.48
SYNE2-228ENST00000639659 PPP1R9AQ9ULJ8 1098 aa18.05■□□□□ 0.48
SYNE2-228ENST00000639659 VWA5AO00534 786 aa18.04■□□□□ 0.48
SYNE2-228ENST00000639659 HMMRO75330 724 aa18.04■□□□□ 0.48
SYNE2-228ENST00000639659 ZNF792Q3KQV3 632 aa18.04■□□□□ 0.48
SYNE2-228ENST00000639659 C16orf86Q6ZW13 317 aa18.04■□□□□ 0.48
SYNE2-228ENST00000639659 KANSL2Q9H9L4 492 aa18.04■□□□□ 0.48
SYNE2-228ENST00000639659 STARD7Q9NQZ5 370 aa18.04■□□□□ 0.48
SYNE2-228ENST00000639659 NRBP1Q9UHY1 535 aa18.04■□□□□ 0.48
SYNE2-228ENST00000639659 CTDP1Q9Y5B0 961 aaPredicted RBP18.04■□□□□ 0.48
SYNE2-228ENST00000639659 PRUNE2Q8WUY3 3088 aa18.04■□□□□ 0.48
SYNE2-228ENST00000639659 MYH7P12883 1935 aa18.04■□□□□ 0.48
SYNE2-228ENST00000639659 C1orf53Q5VUE5 145 aa18.03■□□□□ 0.48
SYNE2-228ENST00000639659 SNRNP48Q6IEG0 339 aaKnown RBP18.03■□□□□ 0.48
SYNE2-228ENST00000639659 DDX11Q96FC9 970 aa18.03■□□□□ 0.48
SYNE2-228ENST00000639659 SYNRGQ9UMZ2 1314 aa18.02■□□□□ 0.48
SYNE2-228ENST00000639659 DCDC2CA8MYV0 355 aa18.02■□□□□ 0.48
SYNE2-228ENST00000639659 ZNF865P0CJ78 1059 aaPredicted RBP18.02■□□□□ 0.48
SYNE2-228ENST00000639659 CPXCR1Q8N123 301 aa18.02■□□□□ 0.48
SYNE2-228ENST00000639659 VTI1AQ96AJ9 217 aa18.02■□□□□ 0.48
SYNE2-228ENST00000639659 ZNF214Q9UL59 606 aaPredicted RBP18.02■□□□□ 0.48
SYNE2-228ENST00000639659 KIAA0355O15063 1070 aa18.01■□□□□ 0.47
SYNE2-228ENST00000639659 COPB2P35606 906 aa18.01■□□□□ 0.47
SYNE2-228ENST00000639659 ACLYP53396 1101 aa18.01■□□□□ 0.47
SYNE2-228ENST00000639659 CTR9Q6PD62 1173 aa18.01■□□□□ 0.47
SYNE2-228ENST00000639659 SLF1Q9BQI6 1058 aa18.01■□□□□ 0.47
SYNE2-228ENST00000639659 ISY1Q9ULR0 285 aaKnown RBP18.01■□□□□ 0.47
SYNE2-228ENST00000639659 ADAMTS5Q9UNA0 930 aa18.01■□□□□ 0.47
SYNE2-228ENST00000639659 DIS3Q9Y2L1 958 aaKnown RBP18.01■□□□□ 0.47
SYNE2-228ENST00000639659 COG6Q9Y2V7 657 aa18.01■□□□□ 0.47
SYNE2-228ENST00000639659 RAB11FIP3O75154 756 aa18■□□□□ 0.47
SYNE2-228ENST00000639659 ADAMTS4O75173 837 aa18■□□□□ 0.47
SYNE2-228ENST00000639659 ATP5JP18859 108 aa18■□□□□ 0.47
SYNE2-228ENST00000639659 DNAJB2P25686 324 aa18■□□□□ 0.47
SYNE2-228ENST00000639659 REPS2Q8NFH8 660 aa18■□□□□ 0.47
SYNE2-228ENST00000639659 NUP133Q8WUM0 1156 aa18■□□□□ 0.47
SYNE2-228ENST00000639659 PPM1EQ8WY54 764 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms