RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 PDE1CQ14123 709 aaPredicted RBP6.34□□□□□ -1.4
SCN1A-216ENST00000637968 FAM133BQ5BKY9 247 aaKnown RBP6.34□□□□□ -1.4
SCN1A-216ENST00000637968 C16orf71Q8IYS4 520 aaPredicted RBP6.34□□□□□ -1.4
SCN1A-216ENST00000637968 DCTPP1Q9H773 170 aa6.34□□□□□ -1.4
SCN1A-216ENST00000637968 SYNCQ9H7C4 482 aa6.34□□□□□ -1.4
SCN1A-216ENST00000637968 RTEL1Q9NZ71 1219 aa6.34□□□□□ -1.4
SCN1A-216ENST00000637968 SEL1LQ9UBV2 794 aa6.34□□□□□ -1.4
SCN1A-216ENST00000637968 GUCA1BQ9UMX6 200 aa6.34□□□□□ -1.4
SCN1A-216ENST00000637968 ARIH1Q9Y4X5 557 aaPredicted RBP6.34□□□□□ -1.4
SCN1A-216ENST00000637968 MINK1Q8N4C8 1332 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-216ENST00000637968 RTL1A6NKG5 1358 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 CLASP1Q7Z460 1538 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 DPPA5A6NC42 116 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 TRIM43BA6NCK2 446 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 TPPPO94811 219 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 NLRP12P59046 1061 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 CYLC2Q14093 348 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-216ENST00000637968 LBRQ14739 615 aaKnown RBP6.33□□□□□ -1.4
SCN1A-216ENST00000637968 ANKRD20A2Q5SQ80 823 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 ANKRD20A1Q5TYW2 823 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 ANKRD20A3Q5VUR7 823 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 EMBQ6PCB8 327 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 MIER3Q7Z3K6 550 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 IFT20Q8IY31 132 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 CNTROBQ8N137 903 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 HDAC7Q8WUI4 952 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.33□□□□□ -1.4
SCN1A-216ENST00000637968 TBC1D7Q9P0N9 293 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 C6orf203Q9P0P8 240 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-216ENST00000637968 ZMYND10O75800 440 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 PRPF6O94906 941 aaKnown RBP6.33□□□□□ -1.4
SCN1A-216ENST00000637968 YEATS4O95619 227 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 PENKP01210 267 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-216ENST00000637968 KRT14P02533 472 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 LINGO3P0C6S8 592 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 HMGB2P26583 209 aaKnown RBP6.33□□□□□ -1.4
SCN1A-216ENST00000637968 PDE6CP51160 858 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 RAD23BP54727 409 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 XRCC4Q13426 336 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 USH1GQ495M9 461 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 HSP90AA5PQ58FG0 334 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 SMYD1Q8NB12 490 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 CDK5RAP3Q96JB5 506 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 SEC16BQ96JE7 1060 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 CORO1BQ9BR76 489 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 PHF24Q9UPV7 400 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 RABGAP1Q9Y3P9 1069 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 GSTA1P08263 222 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 BCRP11274 1271 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 CHMLP26374 656 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 STK3Q13188 491 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 PPP4R3AQ6IN85 833 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 KDM7AQ6ZMT4 941 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 CNBD1Q8NA66 436 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 ABCC2Q92887 1545 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 XAGE2Q96GT9 111 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 CCT7Q99832 543 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 BRD8Q9H0E9 1235 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 ARHGEF10LQ9HCE6 1279 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 ZNF180Q9UJW8 692 aa6.33□□□□□ -1.4
SCN1A-216ENST00000637968 KIF14Q15058 1648 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 MGRN1O60291 552 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 TRIM37O94972 964 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 POTEIP0CG38 1075 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 GSTT1P30711 240 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 PCYT1AP49585 367 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 SEC24CP53992 1094 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 ADKP55263 362 aaKnown RBP6.32□□□□□ -1.4
SCN1A-216ENST00000637968 RIPK1Q13546 671 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 P3H1Q32P28 736 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 BLOC1S2Q6QNY1 142 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 ST13P4Q8IZP2 240 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-216ENST00000637968 NECAB1Q8N987 351 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 TAF4BQ92750 862 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 UBN2Q6ZU65 1347 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 POTEFA5A3E0 1075 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 ELL2O00472 640 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-216ENST00000637968 OPLAHO14841 1288 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 POTEJP0CG39 1038 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 KCNA3P22001 575 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 PMS2P54278 862 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 FKBP15Q5T1M5 1219 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 OTUD6AQ7L8S5 288 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 CNGA4Q8IV77 575 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 VSTM4Q8IW00 320 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 DHX40Q8IX18 779 aaKnown RBP6.32□□□□□ -1.4
SCN1A-216ENST00000637968 IFT81Q8WYA0 676 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 GPATCH3Q96I76 525 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 CCDC43Q96MW1 224 aaKnown RBP6.32□□□□□ -1.4
SCN1A-216ENST00000637968 DNAI2Q9GZS0 605 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 CFAP74Q9C0B2 1584 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 ATP10AO60312 1499 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 NDUFB5O43674 189 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 KRT86O43790 486 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 MGEA5O60502 916 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 OPHN1O60890 802 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 PDE5AO76074 875 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 RPL13P26373 211 aaKnown RBP6.32□□□□□ -1.4
SCN1A-216ENST00000637968 SERPINB3P29508 390 aa6.32□□□□□ -1.4
SCN1A-216ENST00000637968 ALDH1B1P30837 517 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms