RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 SYT1P21579 422 aa6.58□□□□□ -1.36
SCN1A-212ENST00000636194 RNASELQ05823 741 aaKnown RBP6.58□□□□□ -1.36
SCN1A-212ENST00000636194 MCTP2Q6DN12 878 aa6.58□□□□□ -1.36
SCN1A-212ENST00000636194 KLHL24Q6TFL4 600 aa6.58□□□□□ -1.36
SCN1A-212ENST00000636194 TTC30BQ8N4P2 665 aa6.58□□□□□ -1.36
SCN1A-212ENST00000636194 TEKT4Q8WW24 435 aa6.58□□□□□ -1.36
SCN1A-212ENST00000636194 ZFYVE19Q96K21 471 aa6.58□□□□□ -1.36
SCN1A-212ENST00000636194 C1orf115Q9H7X2 142 aa6.58□□□□□ -1.36
SCN1A-212ENST00000636194 KIF17Q9P2E2 1029 aa6.58□□□□□ -1.36
SCN1A-212ENST00000636194 USP16Q9Y5T5 823 aa6.58□□□□□ -1.36
SCN1A-212ENST00000636194 CITO14578 2027 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 SYCE1LA8MT33 242 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 CIITAP33076 1130 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 ABCD1P33897 745 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 EIF6P56537 245 aaKnown RBP6.57□□□□□ -1.36
SCN1A-212ENST00000636194 SNX30Q5VWJ9 437 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 CARD9Q9H257 536 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 SYNCRIPO60506 623 aaKnown RBP6.57□□□□□ -1.36
SCN1A-212ENST00000636194 ADCY5O95622 1261 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 SKILP12757 684 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 PPP2R5AQ15172 486 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 PRPF40BQ6NWY9 871 aaKnown RBP6.57□□□□□ -1.36
SCN1A-212ENST00000636194 MMS22LQ6ZRQ5 1243 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 SV2BQ7L1I2 683 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 RYBPQ8N488 228 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-212ENST00000636194 FBXO18Q8NFZ0 1043 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 ZC3H12CQ9C0D7 883 aaKnown RBP6.57□□□□□ -1.36
SCN1A-212ENST00000636194 FNDC3AQ9Y2H6 1198 aaKnown RBP6.57□□□□□ -1.36
SCN1A-212ENST00000636194 TRIM75PA6NK02 468 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 XPOTO43592 962 aaKnown RBP6.57□□□□□ -1.36
SCN1A-212ENST00000636194 PMLP29590 882 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 AFMP43652 599 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 SERPINB10P48595 397 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 PLCD1P51178 756 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 RNF219Q5W0B1 726 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-212ENST00000636194 RINLQ6ZS11 566 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 EXOC8Q8IYI6 725 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 RUNDC3BQ96NL0 473 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 DNAJC7Q99615 494 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 GUCA1BQ9UMX6 200 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 PARP3Q9Y6F1 533 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 MYOM3Q5VTT5 1437 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 HARSP12081 509 aaKnown RBP6.57□□□□□ -1.36
SCN1A-212ENST00000636194 TMED1Q13445 227 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 ASCC2Q9H1I8 757 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-212ENST00000636194 KDM4CQ9H3R0 1056 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 MAST3O60307 1309 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 IQANK1A0A1B0GTG1 560 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 SRGAP2CP0DJJ0 459 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 PDE6BP35913 854 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 ATG16L1Q676U5 607 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 CYB5RLQ6IPT4 315 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 HOMER3Q9NSC5 361 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 FAM135AQ9P2D6 1515 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 APOA4P06727 396 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 TBC1D10BQ4KMP7 808 aaPredicted RBP6.57□□□□□ -1.36
SCN1A-212ENST00000636194 KIAA1841Q6NSI8 718 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 KRT74Q7RTS7 529 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 SERPINI1Q99574 410 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 BOLA2Q9H3K6 86 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 INTS13Q9NVM9 706 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 RTEL1-TNFRSF6BF6WH68 1400 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 A6NJR5 290 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 CCT2P78371 535 aaKnown RBP6.57□□□□□ -1.36
SCN1A-212ENST00000636194 HADHQ16836 314 aaKnown RBP6.57□□□□□ -1.36
SCN1A-212ENST00000636194 CFAP221Q4G0U5 840 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 ANGPTL8Q6UXH0 198 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 RAPH1Q70E73 1250 aa6.57□□□□□ -1.36
SCN1A-212ENST00000636194 UPF3AQ9H1J1 476 aaKnown RBP6.57□□□□□ -1.36
SCN1A-212ENST00000636194 DBNLQ9UJU6 430 aaKnown RBP6.57□□□□□ -1.36
SCN1A-212ENST00000636194 ARHGEF35A5YM69 484 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 BCAR3O75815 825 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 FOSL2P15408 326 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 CAPZA2P47755 286 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 SZRD1Q7Z422 152 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 TSC1Q92574 1164 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 DACH2Q96NX9 599 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 TSHZ2Q9NRE2 1034 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 GOLGA8IPA6NC78 632 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 GPC4O75487 556 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 GNA14O95837 355 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 F13A1P00488 732 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 HSPA6P17066 643 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 CUL3Q13618 768 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 BSPRYQ5W0U4 402 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 AP1ARQ63HQ0 302 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 PASD1Q8IV76 773 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 NOSTRINQ8IVI9 506 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 IQUBQ8NA54 791 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 SNX19Q92543 992 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 NAF1Q96HR8 494 aaKnown RBP6.56□□□□□ -1.36
SCN1A-212ENST00000636194 GINS4Q9BRT9 223 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 ARHGEF3Q9NR81 526 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 SUPT3HB4E1H0 165 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 TSPY1Q01534 308 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 CCDC105Q8IYK2 499 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 TBC1D19Q8N5T2 526 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 GOLGA5Q8TBA6 731 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 STAG1Q8WVM7 1258 aa6.56□□□□□ -1.36
SCN1A-212ENST00000636194 GPBP1L1Q9HC44 474 aaPredicted RBP6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms